AMCG00018894 (specc1l)


Basic Information

Item Value
gene id AMCG00018894
gene name specc1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24889631 ~ 24934952 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018894
CTTCCTGCAGAGTGTGCCGTAAATGTATCAGGAACCAAGTGCCCAGCATGAAGAAAGCAAGCAGGCCTGTGGTCGGCATGCCCAAGACTGCGGGAGGCAGTAAGGccgcgagtggggagagggggaaacCCGAGGGCAGCACCACAGGGAATGGGGTTGGGAAGACCACCACCAAGACTACCTCTGCACCTCCGCTCTCTAAGGCCAAGAGCAGCGATGACCTGTTGGCAGGGATGACTGGAGGCGTTCCAGCAAACAATAACGCCACCAAGAGCAGGAAGAGCAGCTCAGCTCCCTGGTCCTCCAGCACCTCTAACAATGCTGAAGGGAAGACCAGGACGAGTTCAGGTTCTTCAGCCAAGCGGGTGACGTCTTTGACTGCGAAGGAGGCTAGTTCATCACGAGATCGCCTGAGGGAGCGCTCCAGGACCAGCGCTGGGAAGAAGCTCTCGACGGCGGCGGTAGGGACCAATGATGTCGCGGTGGCCAAACGCACACGCAGCCGTGTGCTCGCCGAGTCAGAGACTCGCATGAGCAAGTCCAAGTCAGATGGCCACATCAGCGACAAGGCGGCCCTGGAGGCCAAGGTGAAAGACCTACTGGGCTTGGCCAAAAATAAGGACGTGGAGATCCTTCACTTACGTAATGAGCTGAGGGATATGCGTGCCCAGCTGGGACTGGGAGAGGAGACCTCGGAGGAGGGTGAGGAGGAAAAGCCAGAGGAGAAGGAGGTTGTCTCCATTTCAGCCACCGACGTGGAGTCTACACTGCTACAGCTCCAGGACCAGAACAACGCCATCAGGGAGGAGCTCAACCAGCTCAAGAATGAGAACCGCATGCTGAAGGACAGACTGAATGCGCTGGGCTTCTCCCTGGAGCAGCGGCTGGACAGCTCCGAAAAGATCTTCAGCTACCAGTCCCTGAGCCCAGATCTGGCCGTGGGCAGTGGGCACAGCGATGGCGGAGGCACCCTGACCTCCTCAGTGGAAGGATCGGCCCCGGGGTCCATGGAAGACCTGTTGAGCCAGGACGAGAACACCTTAACGGAGAACCGGCGCAGCATCTCCGTGGACAACCTGGACAGCGAGTCCAGCGAAGTCTACCAGCCCGTTACCTCCAGCGATGATGCCCTGGACGCCCCCTCAGGCTCCTCGTCCTCCTCGGAATCGGAAGGCGCTACCAGCAGGGAAAGGTCCCGTAAAGGCAGCAGCGGGAACACCAGCGAGGTTTCTGTGGCATGCCTGACTGAGCGCATCCACCAGATGGAGGAGAACCAGCACAGCACGGCCGAAGAGCTCCAGGCCACACTGCAGGAGCTGGCTGACCTCCAGCAGATCACCCAGGAACTTAATGCTGAAAACGAGAGACTGGGGGAGGAGAAAGCCATCCTGATGGACTCCCTGTGCCAGCAGAGCGACAAGCTGGAGCACTACGGCCGGCAGATTGAGTACTTCCGCTCCTTGTTGGAAGAGCACCATGTCTCCTATGTCATCGATGAGGACATAAAGAGTGGCAGGtacctggagctggagcagcgcTATATGGACCTGGTGGAGAACGCCCGCTTTGATCGTGAGCAGCTCCTTGGCGTCCAGCAGCACCTTAGCAACACCTTGAAGATGGCCGAGCAGGACAACAAGGAGGCCCAGGAGATGATCAGCGCCCTGAAAGAGAGGAACCACCACATGGACCGTATCATCGAGTCCGAACAGAAAGACAAGGGGGCACTGGTGGCTGCGCTGGACGAGTACAAGGCTGCGGTGAACAACGACCAACTTGAGCTGAGCCGCTGCAAGGCCCAGTTGGATCAGGAGAGGCAGAAGGTGGCCGAGCTCTATTCCATCCACAACTCGGGTGACAAGAGCGACATCCGCGAGTTGCTGGAGAGCGTGCGCCTGGACAAGGAAAAGGCTGAGACCAGGGCCTCCAACCTGCAGGAGGAGCTGGGCCACATCCGCAATGACGCCATGCATCTCCAGGACACTCTGGGCAAGGTGGAAGGAGAGTACAGACACTTTCAGGACGAGATGCAGAAGCAGTTGTCGGAGCTCTCCCGCAGCCTGGAGAAGCAGCGCACCGagctggaggagaaggagacCGAGATTGGGGACATGAAGGAGACCATCTTCGAGCTGGAGGACGAGGTGGAGCAGCACCGGGCCGTCAAACTCCATGACAACCTCATCATCTCGGACTTAGAGAATTCAGTGAAAAAGCTGCAGGACCAAAAACATGACATGGAGAGGGAAATTAAAATCCTGAACCGGAGGCTACGGGAGGAGTCTGCGGAGTGGCGTCAGTTCCAGGCTGACCTGCAGACGGCAGTGGTCATTGCCAACGACATCAAGTCCGAGGCCCAGGAGGAGATCGGGGACCTGCGGCGCCGGCTTCACGAGGCCCAGGAGAAGAATGAGAAGCTGGGCAAGGAACTGGATGAGGTCAAGAACCGCAAgCAGGATGAAGAGCGAGGCCGGGTGTACAACTACATGAACGCCGTGGAGAGAGATCTCGCTGCCCTTCGTCAGGGGATGGGTTTGAGCCGTCGCTCCTCCACCTCCTCGGAGCCCTCCCCGACCGTCAAGACCCTCATCAAGTCCTTCGACAGCGCCTCGCAAGTGGTCCCAAGCACTGCAGTGGCTGCCACTACGCCCGCTGCTGCTGCGGCCGCTATTCCCAGAACCCCCCTCAGCCCCAGTCCACTCAAGACCCCCCCAGCGGCAGCCGTGTCTCCTATACAGAGACATTCCATAAGTGGACCCATTTCATCTCCCAAACCCCTGTCTTCACTGACTGACAAGAGACCCAGCTATGCCGAAATCAGTGTTCCAGCAGAACATCTCCTGCGAACCTCCTCCACCAGTCGACCAGCGCCCACCATGCAGAGAGTCCCTGCCATCGACTCCTCCAAGGCCATCTCAGACAGCGGTTCATCGGCCTCCATCATGGCCATGGGCTCAGCCTCCCCTCAGCTctccctgtcctcctcctcccccacagCCTCCGTCACCCCCACCGCCCGCAGCCGCCTCCGggaggagaggaaggacCCACTTTCAGCCCTCGCTCGGGAGTATGGGGGATCCAAGAGGAACGCGCTGCTCAGATGGTGCCAGAAGAAAACCGAAGGATACCAGAACATTGACATCACCAACTTCAGCAGCAGCTGGAACGATGGCCTGGCCTTCTGTGCTGTGCTTCACACCTACCTGCCTGCTCACATCCCCTACCAGGAGCTCAACAGCCAAGACAAGGCAATTAGGAGAAATTTCACACTGGCGTTCCAGGCCGCCGAGAGTGTGGGCATCAAGTCTACATTGGACCTTAACGAGATGGTGCGGACAGAGCGGCCGGACTGGCAGAGCGTGATGACCTACGTCACGGCTATTTATAAATACTTCGAGACCTGATCCGCCCCATGCTGAACCTGGGCATCTCCTTTCTCCCCCACCACAACGGACCACTCTCTCTGAAACTGCAACGCACCCTTTCAAGTTTGCCACAGCCAGCTAGGTTTCCTCCCAAGGCAACTCTGGAGAAACACAGGCCTACTTTTCCTCAAGCGGGATGGGATGCTTTCTTGTGCTCAGGTGCCGAGATGTGCTCCTGAACAGAATTCGCTATGGGTTACGGAGAAGGccggaaagagaaagagagaactGCCATTTTGTTGTCTCTTTcatttgtggtttttttttgttaatttatttgttttgtactttgatttagtttttttttgtttttgttttgtggtttgttttttgtggcaACCAATATACATTCCAGTAATTGTAAAAATAGGCCCATTCTGTCACTACAGCCTCTTGTATTGAAGTGTATGAAGACGAACTGCTACAAAGCTGCTTTTGCTTGGaaatttgttgtattttgttttcagttggttTCGCCTCAGAAAGACAGGGATGCGTGGTCATAGAGGTCACCATCATGTTAATCTCCCAGAATTTCAGAAGCTACTGCGTTAAACTGCatcccaaaataataattaaaaaaaaaaaccttgcacAATAAAACCTATAACATAATAGTTCTTACTTGTCACTAGCAGAGCACAGTGCTTGAGTTTTCAGCAGCCTTAATTCTGTGACTAGGTAAAACAGAAAGCATCCAGTTTTTCTATTTCCAAGGGTGTTTTTAGAAGGATGAAAATGCAGATTTGGGGTTTtagttttgtgctgtttttttttttttttttaa

Function

symbol description
specc1l Predicted to enable beta-catenin binding activity. Acts upstream of or within cell adhesion. Located in actin cytoskeleton. Implicated in Opitz GBBB syndrome type II and oblique facial clefting 1.

NR:

description
PREDICTED: cytospin-A

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K23028 SPECC1; cytospin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018894 True 4215 mRNA 0.55 15 24889631 24934952

Neighbor

gene id symbol gene type direction distance location
AMCG00018892 adora2a,LOC106566259,LOC106563117,LOC106514582 coding downstream 12824 24856214 ~ 24876807 (-)
AMCG00018891 NA coding downstream 62893 24821217 ~ 24826738 (-)
AMCG00018893 NA coding downstream 81724 24799019 ~ 24807907 (-)
AMCG00018890 NA coding downstream 112931 24756869 ~ 24776700 (-)
AMCG00018887 NA coding downstream 153480 24715823 ~ 24736151 (-)
AMCG00018895 bcr,LOC106579959 coding upstream 26126 24961078 ~ 25007942 (-)
AMCG00018896 NA coding upstream 136590 25071542 ~ 25073116 (-)
AMCG00018904 anapc7 coding upstream 258212 25193164 ~ 25203675 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding upstream 278687 25213639 ~ 25217823 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding upstream 285152 25220104 ~ 25225859 (-)
G119426 NA non-coding downstream 47510 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 281169 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 321332 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 1778111 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 1904859 22984184 ~ 22984772 (-)
G119466 NA non-coding upstream 109999 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 327410 25262362 ~ 25333175 (-)
G119600 NA non-coding upstream 544058 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 637102 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 655620 25590572 ~ 25656954 (-)
G119144 NA other downstream 2083293 22804345 ~ 22806338 (-)
G118936 NA other downstream 2775936 22080464 ~ 22113695 (-)
G118727 NA other downstream 4191804 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 4199709 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 4211194 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 140446 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 199819 25134771 ~ 25171644 (-)
G119545 NA other upstream 251255 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 1516772 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1842683 26777635 ~ 26797720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018750 specc1lb coding NC_007132.7 CM002905.2 13233377 ~ 13284660 (+)
grasscarp (Ctenopharyngodon idella) CI01000006_11672314_11695885 SPECC1L, SPECC1LB coding CI01000006 null 11671854 ~ 11695920 (-)