AMCG00018895 (bcr,LOC106579959)


Basic Information

Item Value
gene id AMCG00018895
gene name bcr,LOC106579959
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24961078 ~ 25007942 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018895
atGCTTCCTTTACTGGGACGCCTCCCACCTACGGCTATGACGCGGACCGTGCGGAGGAGCAGCGGCGGCATCATGACATGATGCCCTACATCGATGActcgccctcctcctccccccatcTCAGCTCCAAGAGCCGGGGGAGTAGAGACACGCTGTCCTCGGGATCCCTAGAGTCCTCCAAGTCGGTGAGTCTGGGATTGCCCTTCATGACATCCGTCACCTCCACACCTGAGAGCTCCATTCTAGTATGTTGTTCCTACACTGCCTACATTGCCAACAAGAAGACAAGCGAGCTGGATCTGGAGAAAGGGCTGGAGATGAGGAAGTGGGTGCTGTCCGGGATCCTGGCCAGTGAAGAGACGTACCTCAGCCATTTGGAAGCACTATTGCTGCCCATGAAGCCCCTGAAAGCTGCCGCCACCACGTCTCAGCCTGTTCTGACCATGCAGCAAATCGAGACCATCTTCTTCAAAGTGCCTGAGCTCTTTGAGATCCACAAGGAGTTTTACGATGGCCTCCTTCCCAGGGTGCAACAGTGGAGCCACCACCAGAGGGTGGGCGACCTCTTCCAGAAACTGgCCAGTCAGCTCGGATTGTATCGGGCCTTTGTGGATAACTACGAGGTTGCCGTAGAAACCGCCGAGAAGTGCTGCCAGGCCAACACACAGTTTGCTGAAATCTCAGAGGATCTACTGAAACACACCCCATCCAGTCACCCCGACTACCCCTTGCTGCAGGACGCCCTCCGCATCTCCCAGAACTTCTTGTCCAGCATTAATGAGGAGATTACCCCTCGCAGGCAGTCCATGACCGTCAAGAAAGGAGAGCACCGGCAGCTTCTCAAGGACCGCTTCATGGTGGAGCTGGTGGAGGGAGCTCGGAAGCTGCGCCATGTCTTCCTCTTCACGGACCTGCTGCTCTGTGCCAAACTGAAGAAGCAGATCGGAGGGAAGAGCCAGCAGTATGACTGCAAGTGGTACATCCCCCTGTCTGACCTCACCTTCCAGACCATCGACGAGTCTGACTCCTCGCCCATCCCCCAGGTTCCCGACGAGGAGATCGATGCCATGAAGATCAAGATCTCCCAGATCAAGAACGAGATCCAGAGGGAGAAGagagccaATAAAGGGATGAAGGCGATCGAGAGGTTAAAAAAGAAGCTGTCGGAGCAGGAGTCTCTGCTGTTGCTCATGTCTCCCAACATGGCATTCAGGGTGCACAACCGGAATGGCAAGaGCTATATGTTCCTGATCTCTTCCGACTACGAACGAGCAGAGTGGAGAGAGATCATCCGGGAACAGCAGAAGAAATGTTTCAAGAGCTTTTCTCTGACCTCGGTTGAGCTGCAGATGCTGACGAACTCCTGCGTGAAGCTACAGACGGTTCACAACATCCCCCTGACCATTAATAAAGAAGATGACGAAACCCCTGGGCTGTATGGGTTTTTGAATGTAATCGTCCACTCGGCATCAGGGCTGAAGCAGAGTTTAAATCTCTACTGTACATTAGAAGTCGACTCCTTTGGCTACTTTGTGAATAAAGCGAAGACGCGGGTTTACAGAGACACTACAGAACCTAACTGGAATGAGGAGTTCGAGATTGAGCTAGAAGGCTCCCAGACCTTGAGGATACTGTGCTATGAGAAGTGTTACAACAAAACCAAGCTGAACAAGGAGGATGGGGAAAACACTGACCGAATCATTGGCAAAGGACAGATACAGATGTTTAACTTTCACAAGACTCCTGTGCAAACCAGTTATGTATTTACTGTGAATCTAATGACAGGACTGGGGGGGAGTGAGTGCCACCTGGAAGACACCTGCACCCAGTTTCAGGGGAGCTGTGCCATCAAGAGCGAGGAAGGTTTGGAGGAGGCCAGCAAGAGCTCTCTCACGGGGGCCAGGCTGTGGGGGCGAGTGAGGAGCAAACTGCTCCGGCAGAAGCTGGATCCACAGACCCTGCAGGGCAAAGACTGGCAGAGAACAGTGATATTCATGAACGGGATTGAAGTCAAGCTCTCAATGAAGTTTACCAGCCGTGAGTTCAGCTTAAAGAGGATGCCTTCTCGGAAACAGACTGGTGTTTTTGGAGTGAAAATTGCTGTAGTGACCAAaCGGGAGAGGTCAAAGGTGCCATACATTGTGAGGCAATGTGTGGAGGAGATTGAGAGGCGGGGCTTGGAGGAAGTGGGCATCTACAGGGTGTCTGGGGTGGCCACGGACATCCAAGCCTTAAAAGCAGCTTTTGATGCCAATAACAAGGACGTGTCAGTGATGATGAGTGAGATGGATGTGAACGCCATCGCTGGCACCCTGAAGCTGTACTTCCGGGAGCTGCCCGAGCCCCTCTTCACCGATGAACTGTACCCCAACTTTGCTGGAGGAATTGCCCTGTCCGACAGCGTGGCCAAGGAGAGCTGTATGCTCAATCTGCTCCTGTCCTTACCTGAGCCCAACCTCGTCACATTCCTCTTCCTGCTGGACCACTTAAAGAGGGTGGCAGAAAATGAAGGCGTCAACAAGATGTCTCTGCACAACCTGGCCACAGTGTTTGGCCCCACATTGCTCCGCCCCTCCGAGAAGGACAGCAAGATTCCGGCCAATCCCACGCAGCCAATCACGATGAGTGACAGCTGGTCACTAGAGGTCATGTCCCAGGTCCAAGTCTTACTGTATTTCCTTCAACTGGAGACCATTCCGACGCCGGACAGCAAGAGACAGAGCATACTCTTCTCCACTGAGGTG

Function

symbol description
bcr Predicted to enable guanyl-nucleotide exchange factor activity and protein serine/threonine kinase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and protein phosphorylation. Predicted to be located in axon and dendritic spine. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; chronic myeloid leukemia; and leukemia. Orthologous to human BCR (BCR activator of RhoGEF and GTPase).

NR:

description
PREDICTED: breakpoint cluster region protein-like isoform X2

GO: NA

KEGG:

id description
K08878 BCR1, BCR; breakpoint cluster region protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018895 True 2744 mRNA 0.53 22 24961078 25007942

Neighbor

gene id symbol gene type direction distance location
AMCG00018894 specc1l coding downstream 26126 24889631 ~ 24934952 (-)
AMCG00018892 adora2a,LOC106566259,LOC106563117,LOC106514582 coding downstream 84271 24856214 ~ 24876807 (-)
AMCG00018891 NA coding downstream 134340 24821217 ~ 24826738 (-)
AMCG00018893 NA coding downstream 153171 24799019 ~ 24807907 (-)
AMCG00018890 NA coding downstream 184378 24756869 ~ 24776700 (-)
AMCG00018896 NA coding upstream 63600 25071542 ~ 25073116 (-)
AMCG00018904 anapc7 coding upstream 185222 25193164 ~ 25203675 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding upstream 205697 25213639 ~ 25217823 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding upstream 212162 25220104 ~ 25225859 (-)
AMCG00018905 vps29 coding upstream 230955 25238897 ~ 25244280 (-)
G119426 NA non-coding downstream 118957 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 352616 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 392779 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 1849558 23109601 ~ 23111520 (-)
G119181 NA non-coding downstream 1976306 22984184 ~ 22984772 (-)
G119466 NA non-coding upstream 37009 25044951 ~ 25045344 (-)
G119557 NA non-coding upstream 254420 25262362 ~ 25333175 (-)
G119600 NA non-coding upstream 471068 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 564112 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 582630 25590572 ~ 25656954 (-)
G119144 NA other downstream 2154740 22804345 ~ 22806338 (-)
G118936 NA other downstream 2847383 22080464 ~ 22113695 (-)
G118727 NA other downstream 4263251 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 4271156 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 4282641 20644885 ~ 20678437 (-)
AMCG00018898 NA other upstream 67456 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 126829 25134771 ~ 25171644 (-)
G119545 NA other upstream 178265 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 1443782 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1769693 26777635 ~ 26797720 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000347_01789688_01837489 BCR coding CI01000347 null 1789401 ~ 1837643 (+)