AMCG00018897 (LOC106585468,LOC104958862)


Basic Information

Item Value
gene id AMCG00018897
gene name LOC106585468,LOC104958862
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25091131 ~ 25117419 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018897
AACCATGCCAAGCTATTGAAGGTTTCCAAGACAGAGAAATCACGGATCATTATTTTACGATTGTGGATATTGGTTAAATATTGTGTGGAACAGTGGTGCCAAAATGAGCGAGCAGATCAAAGCTATAGTAGAGCACCTCAATAAGGAGCCCTTCAAGAAAAACTTCAACCTCATAACGTTTGACTCCCTGGAGCCCAtgcagctgctgcagcttctCAACGATGTTCTAGCAACTATCGACCCCAAGCAAGACATTGATATTCGAGAGGAAATGCCAGATCAGATGGCAAGGCGAATGTTTTCCCTGCTGGGAATGCTGAAGTACAAACCTCCCGGTAATCCATCAGACACAAGCAATTTCCGTCAAGGTCTGGTGACTGGCAGCAAACCTGTCATTCACCCCATCCTGCACTGGCTGCTGCTGAGGATCAATGAACTGAAGAAAAGAGCTTACCTGGCCCGTTTCCTCTTTAAGCTGGAGGTGCCTGCCGAGTTTCTGCAGGACGATGTCGTTGCAGACACATATCATCAGTATGAAGAGCTAGTGGAGAGCTTCAAGAACTATCACAAGGAATGTGAATCGCTGAAGAGCTCTGGCTTCTCCACAGCAGAAATCAGAcggGACATTGGTTCCATGGAAGAAGAAAAGGATCAACTGATCAAGAGAGTGGATCGCCTGAAGAAAAGGGTGGAGACGGTGTCCAATCACCAGCGCATGCTTGAGCTGGCCAGGCAGCTGCGggtggagaaggagagggaggagtcACTGGCCCACCAGAAGCAAGAGCAGAAGAACCAGCTGTTTCACGCTGATCAAAGGCTACAGAGATCCCAACAGCAACTTAAGGACCTGCGACAGGCAGCGGCAGATGCAAAGCCGGAGAGCTTGATGAAGAGACTGGAGGAGGAGATCAAGTTCAACATGTACATGGTTTCCGACAAACTGCCCAAGGAGCTGGAGAGCAAGCGGACGACGGTGCAATACTTGCAGAAAGTGGTCGCCGAACCTGTTATGGGACAGGCGGAGCTGGGCGAGCTGGAGGACAAGATTCGTGAAATGAACATTCAGATTAATCAGCTGATTGAGAAGAGGATGATGCGAAATGACCCGATAGATGACAAACACTCTCTATTCAGACAACAGGCCTCCATCATCTCACGCAAGAAGGAGGCCAAGGCggaggagctgcaggaggcccGGGAGGAGCTGGCCAGTGTGGAGAAGGAGCTGGCACACAAAAACAGCCAGGCCCGCGACAGTGATGGCGCCGAGGTCATCAAGGGTGATGAGTTCAAGAGGTATGTGAGTAAACTGCGCAGCAAGAGCACGCTGTACAAGAAGAGGAGGCAGGAGGTAGCGGAGCTCCGGGCGGAGTATGGCGTCCTGCAGAGGACTGAGGACATCCTGAAACAGCGCCACGAAGCCCTACAGCAGCAGCTGCAATCCATGGAAGCCAAGAAGGGCATCTCTGGGTACAGCAACAcacaggaggagctggagagggTGTCGTCTATCAAGAGCGAGCTGGACGAGATGAAGGGCCGTACGCTGGACGATATGTCTGGGATGGTAAAGAAATTGAATTCTGTGATAGCAGAGAAGAAGGCTGCCCTTGCTCCTGAGGTGCGAGGCCTCAGAGAGCAGAACACAGAAGAGGAAAGCAGATACCATTACATCAACTGCATGAGACAGGtcattgaaatgcaaatgcagaGAGCAGCGGATGAAATGCGGGCCTATGTGTCTCCAGATCCGCAGGAAAGGCGAAAGGCTGTGAGGGAGCAGTACACCAAGAATATCACCGAGCAGGAAAGTCTGGGCAAGAAGCTGCGTGAGAAACAGAAGGCAGTACGAGAGAGCCACGGCCCCAACATGAAGCAGGTGAAGATGTGGCGGGACTTGGAGCAGCTGCTGGAGTGCAAGAAGCAGTGCCACCTGAGAGCACAGAGCCAGGCCTCCATTGGACACGTCATCCAGGAGGGGGGCGAGGACAGGCTAGTCCTCTGAGCCCTCCAGCACTGCTCTCCCCTGCAGCCACCACCTTCCACCACACCCATGTAGCCATGCCCCTCCTAAAAATACCTCAAATGGGATTGATTATTGTTCGCAGACCGTGACAGACAAGTCTGAGGTTGTAACCGTGCAATTGCAAGCCTCACTTATTGCTTAATTGACCCTCATGTGTTGAACTTTGACCCAGTTCTAAGATCACAAAACCAAGCccaatgtttctttaaatatgtttctcCTGGACACAATTAAATCAACAGGAAGGGAGCACACCATGGAGCAAATCAGGTTGTCTGTAGTATAAAGCAATTTTGTAAATAAGTGCACTTGATTTATTACCAAAGCAGCAATATGTACATGCAATtacaaactttgtattttatttttgatcttaTTCAGAGAAACccaaagtatgtattttatcacttcataataatttttttaatgttcacacTGTAGCTCTACATCTCTGAAATAGCAGTCTTTGTTTTAGGGTAAAATTGTATCTTTGTATTAGTAGAagtgtattaaatgttttggtatacaccacaattaaattaaaaactttgtgtgtgtatagtatGAAATGATTGCCAGTAAGCAGAGAAACACGAATTAACACCAAATTTAATTAAGATGTACAGCTTAGGGCTGGGCgaaatgacttaaaaataatatctcgatatttttagaagt

Function

NR:

description
PREDICTED: intraflagellar transport protein 81 homolog

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0032006 regulation of TOR signaling biological_process

KEGG:

id description
K19677 IFT81; intraflagellar transport protein 81

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018897 True 2707 mRNA 0.48 18 25091131 25117419

Neighbor

gene id symbol gene type direction distance location
AMCG00018899 NA coding upstream 846 25084176 ~ 25090285 (+)
AMCG00018886 selenom,selm,LOC103043669 coding upstream 377603 24709674 ~ 24713528 (+)
AMCG00018876 NA coding upstream 713203 24372640 ~ 24377928 (+)
AMCG00018850 gucd1,LOC106585462 coding upstream 2220358 22862980 ~ 22870773 (+)
AMCG00018853 NA coding upstream 2256047 22820669 ~ 22835084 (+)
AMCG00018908 NA coding downstream 19168 25136587 ~ 25144798 (+)
AMCG00018902 LOC103365013,LOC102776280 coding downstream 54066 25171485 ~ 25188842 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding downstream 86253 25203672 ~ 25213155 (+)
AMCG00018900 NA coding downstream 128226 25245645 ~ 25261282 (+)
AMCG00018909 NA coding downstream 169989 25287408 ~ 25294157 (+)
G119429 NA non-coding upstream 240081 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 255422 24799950 ~ 24835709 (+)
G119419 NA non-coding upstream 281312 24807747 ~ 24809819 (+)
G119354 NA non-coding upstream 492117 24537666 ~ 24599014 (+)
G119523 NA non-coding downstream 185767 25303186 ~ 25313495 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding downstream 213971 25331390 ~ 25338189 (+)
G119574 NA non-coding downstream 368426 25485845 ~ 25488149 (+)
G119669 NA non-coding downstream 921860 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 990050 26107469 ~ 26107849 (+)
AMCG00018820 NA other upstream 3193431 21848370 ~ 21897700 (+)
G118815 NA other upstream 3901885 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4318545 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 4395937 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 4487816 20601956 ~ 20603315 (+)
G119507 NA other downstream 116663 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 348672 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 561258 25678677 ~ 25718426 (+)
G119762 NA other downstream 1343201 26460620 ~ 26461227 (+)

Expression


Co-expression Network