AMCG00018898


Basic Information

Item Value
gene id AMCG00018898
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25075398 ~ 25084586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018898
GATCTAAACCCAACACACAATGCTGCCCCTAATCTTCATCATTGTCTCACTGGTGTGGGCGCCCAGCCTGTCCTGACTCAGACAGCCTCAGTGTCAGCTTCCCCAGGAGGCACTGCCCAGATCCCCTGCACTATTGCTGGTGGGAATTCAGGAGGTGTCAGTTACTACTGTGTGTACTGGTACCAGCAGAGACAAGGCAAAATCCCTCGATATCTATTAAATTACCATTCCAGCATCAGCAGGGGCACTGGAACTCCTGATCGGTTCTCTGCTTCAAAAGACTCTTCCAGGAACATCTGCCACTTGAGCGTTTCCAATGTTCAGGTAGAGGACTACGCTGATTACTACTGCAAAGTGTGGGATGATGACACAAGAGCATACCTTGTTAAAACTGATATACTTGTCTTGTGTCCCTCGGGTGTGGGCGCCCAGCCTGTCCTGACTCAGACAGCCTCAGTGTCGGCTTCCCCAGGAGGCACTGCCCAGATCCCCTGCACTATTGCTGGTGGGAATTCAGGAGGTGTCATTTACTATTATGTGTACTGGTACCAGCAGAGACTAGGCAGCATTCCTCTATATGTACTGTGTCAGACTTCCAGCACAGAGAGGGGCACTGGAACTCCTGACCGGTTCTCTGCTTCAAAAGACTCTTCTAGGAACATCTGCCACTTGAGGATTTCCAATGTGCAAACAGAGGACTACGCTGATTACTACTGCAAAGTATGGGAAGATGACAGCTGCTCACAGTGGGGCTCAATCACTGTGTTACATCTTCGGCTCAGGGACGACACTGGTCGGGCCAGCTCTCCGCCCTCCCTGACTCTGCTCATGCCGTCGCCCAGAGAGCTGGAGTCCCAGGATAAGGCGACCCTGGTGTGTCTGGTAGAGAACTTCTTCCCCAAGGCGGTCACGGTGACCTGGAAAGCCGACGGGCGCCTCATCAGCACCGGCGTCCTGACCGCTCCGGCCGCGCAGAGGAGCGACAACAGCTTCTGCACCAGCAGCCTCCTGACGCTGGCAGCCGCCGAGTGGCGCAAACACGGCGCCGTCTCCTGCGAGGTGAGCCATGAGGCGCTGGCCAGAGTGCGCCTGAGAGCCGGGCTGCTGCAGCATACTCCGCTCAGCCTGACAGCTTAGAGCCTCGATTGACTCGCATGTGAAGCGGCTCCTGTGCATGTTAACAACTTTTTTTTGATCattgtgtgtgctgctgttttcagagctttgtttttttacacatcCTGTATGTACTCttaggtgattttttttctgatctgttctgttttattttagaaataaaatgctttcattGCAAA
>TU149755
cttaatttatttttcattttgcatgctctatatattttttttctaattatattaccattttaaaaccaaTGTCAATTCATGTGAGAAAGGtaggaaaaatgaataaattcgCCTACTTACTTGTCGATAATATTCAGCAACACAAGCGCGACATGCTATTGTGTCTTGGCTTTTGCATGGAAGTCGGTCCAGTAAATTGTCTGGAAGCTGCTTTTCAAACATTCAGCCTTGTTACAACGTTGTAAATCAAGAGAGAGATACTCTGTAAGTCCGTTTAAAAAGCAAGTGGGAGAGCTGTGCACTAGGCAAGTCCAGAGCATCTCCTCTGGTAGCCGGTAGGGCTGGTGTGCCCAGCTCTCCACTGTGCGCTGGGTTTTTGACAGGGGCTCAATCACTGTGTTACATCTTCGGCTCAGGGACGACACTGGTCGTGTAAAGGGCCAGCTCTCCGCCCTCCCTGACTCTGCTCATGCCGTCGCCCAGAGAGCTGGAGTCCCAGGATAAGGCGACCCTGGTGTGTCTGGTAGAGAACTTCTTCCCCAAGGCGGTCACGGTGACCTGGAAAGCCGACGGGCGCCTCATCAGCACCGGCGTCCTGACCGCTCCGGCCGCGCAGAGGAGCGACAACAGCTTCTGCACCAGCAGCCTCCTGACGCTGGCAGCCGCCGAGTGGCGCAAACACGGCGCCGTCTCCTGCGAGGTGAGCCATGAGGCGCTGGCCAGAGTGCGCCTGAGAGCCGGGCTGCTGCAGCATACTCCGCTCAGCCTGACAGCTTAGAGCCTCGATTGACTCGCATGTGAAGCGGCTCCTGTGCATGTTAACAACTTTTTTTTGATCattgtgtgtgctgctgttttcagagctttgtttttttacacatcCTGTATGTACTCttaggtgattttttttctgatctgttctgttttattttagaaataaaatgctttcattGCAAA

Function

GO: NA

KEGG:

id description
K06553 VPREB, CD179a; pre-B lymphocyte gene

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018898 True 1316 mRNA 0.53 5 25075398 25084586
TU149755 False 957 TUCP 0.49 2 25075398 25077580

Neighbor

gene id symbol gene type direction distance location
AMCG00018896 NA coding downstream 2282 25071542 ~ 25073116 (-)
AMCG00018895 bcr,LOC106579959 coding downstream 67456 24961078 ~ 25007942 (-)
AMCG00018894 specc1l coding downstream 140446 24889631 ~ 24934952 (-)
AMCG00018892 adora2a,LOC106566259,LOC106563117,LOC106514582 coding downstream 198591 24856214 ~ 24876807 (-)
AMCG00018891 NA coding downstream 248660 24821217 ~ 24826738 (-)
AMCG00018904 anapc7 coding upstream 108578 25193164 ~ 25203675 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding upstream 129053 25213639 ~ 25217823 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding upstream 135518 25220104 ~ 25225859 (-)
AMCG00018905 vps29 coding upstream 154311 25238897 ~ 25244280 (-)
AMCG00018907 pptc7,LOC107552188,LOC102794815,LOC107553043 coding upstream 182162 25266748 ~ 25285927 (-)
G119466 NA non-coding downstream 30054 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 233277 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 466936 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 507099 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 1963878 23109601 ~ 23111520 (-)
G119557 NA non-coding upstream 177776 25262362 ~ 25333175 (-)
G119600 NA non-coding upstream 394424 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 487468 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 505986 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 520445 25605031 ~ 25606144 (-)
G119144 NA other downstream 2269060 22804345 ~ 22806338 (-)
G118936 NA other downstream 2961703 22080464 ~ 22113695 (-)
G118727 NA other downstream 4377571 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 4385476 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 4396961 20644885 ~ 20678437 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 50185 25134771 ~ 25171644 (-)
G119545 NA other upstream 101621 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 1367138 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1693049 26777635 ~ 26797720 (-)
G119827 NA other upstream 1728894 26813480 ~ 26814073 (-)

Expression


Co-expression Network