AMCG00018903 (arpc3,LOC107737855,LOC107707141)


Basic Information

Item Value
gene id AMCG00018903
gene name arpc3,LOC107737855,LOC107707141
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25213639 ~ 25217823 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018903
AGTTCAGTTTCCCTGGCGGAAGTGGTTTGCTCATCCACTTCCTGCTGCTTCAGTGCTGGGTGGGACAGCGGAAACAGTGCACTGGTTTAGACTGACAGCTAATTTTTTCGGCTGGTAATAGTTGAAAATACTTGTCCAAAATGCCGGCTTACCATTCGAGCTTGATGGATTCCGACACCAAAATGATCGGTAACATGGCTTTACTGCCCCTGAAAACCCAGTTCAAAGGACCGGCTccgagagagaCTAAAGATTCTGACATCATTGATGAAGCCATCTACTATTTTAAAGCCAACGTCTTCTTCAAGAACTATGAAATCAAGAATGAAGCTGACAGGACCCTGATTTACGTGACTCTGTACATTTCTGAATGCCTCAAGAAGCTGCAGAAGTGTAACTCCAGGGGccagggagagaaggagatgtACACCCTGGGCATTACCAACTTCCCTATCCCTGGAGAGCCGGGCTTCCCTCTTAACGCCATGTACGTCAAGCCAGGCAACAAGCAGGAGGATGAGGTGATGAGGGGCTACCTGCAGCAGATCAGACAGGAGACCGGCCTGCGGCTGTGTGACAAAGTCTTCGACCCCGCGACAGACAAACCCAGCAAGTGGTGGATGTGCTTCGTGAAAAGGCAATTCATGAACAAGAGCCTCTCTGCTCCAGGGCAGTAAAGCAGATCAAAGGTTGACCTTTACAGTGGgatgcaacttttttttttcccttgtgtctgtctgtgcatatTTATCCtcccaatactttttttttttatacaggggttaaatgtattgaaacttAGCAGCGTTCTATCTGGACTGCttcagtaaaaatgttaaactggtGCTTAATTAAAACAGTACAGATCTACCCCAGTGGTACCCCAGTACTTTCAATAGGCTCATTGGACTGGGGCCACTTTCAGGTGATGCATATTCCATgtcccaccaccaccaccagatCTTATGATATTCCTAATCTGTGCTGCTTCTTGGAAGATTTTTTTCTCAATAATGCCCCGCTCACTCTGCTtccagaggaaaacaaaaatcaaaaacaaacctgtGACTTATATAGGGTTTTTATTCATCCTGTTTATATAATAGTGCCATTTCAGCTGCAAATTTGCTTGTTTTGGATTAactacaataaaatactgtttttgcacattgtttttcCTCAACCGAAGCAGGGGCAGTTTGGTTACATTTTCATCCACATTGGGGGTTGTGTTAATGAACTGTATACTAGGCATAGGCTCAAATACTCAAAAGGATGTTAGTATGATTACTTGTGAATTCTGGGAGAGAATACAAATTAAGCTTTTgtctatattaaataaactgtgtgACATTATCCTAAGGGGTGTGACATTTGAAATCACACTGTACCTCTAGCCTCCCCCGTTTTAgcatgaacattaaaaaaaaaaaaaaaaacggggggaaaaaaatagcaTATTCAAGGagggaaaacatttcaaatgccctactatatacacattacaaaaaGTTAATTCCAATATCTGGTACAGTTGTATAGCAATAATACTAGGGGGCATATTTGTACCCATTATGTAGATCAGACTTGCATAATGTGGAGGTGTATTCTGGGTAGGATAATGAGGTTTACTATATATTATACCTGCTTTTCTGTTGTGTGGATAGAGACTGCTTACTGGGGTCTTGG

Function

symbol description
arpc3 Predicted to enable actin binding activity. Predicted to contribute to actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC3 (actin related protein 2/3 complex subunit 3).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 3

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05756 ARPC3; actin related protein 2/3 complex, subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018903 True 1689 mRNA 0.42 7 25213639 25217823

Neighbor

gene id symbol gene type direction distance location
AMCG00018904 anapc7 coding downstream 9964 25193164 ~ 25203675 (-)
AMCG00018896 NA coding downstream 140523 25071542 ~ 25073116 (-)
AMCG00018895 bcr,LOC106579959 coding downstream 205697 24961078 ~ 25007942 (-)
AMCG00018894 specc1l coding downstream 278687 24889631 ~ 24934952 (-)
AMCG00018892 adora2a,LOC106566259,LOC106563117,LOC106514582 coding downstream 336832 24856214 ~ 24876807 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding upstream 2281 25220104 ~ 25225859 (-)
AMCG00018905 vps29 coding upstream 21074 25238897 ~ 25244280 (-)
AMCG00018907 pptc7,LOC107552188,LOC102794815,LOC107553043 coding upstream 48925 25266748 ~ 25285927 (-)
AMCG00018912 NA coding upstream 76281 25294104 ~ 25301702 (-)
AMCG00018911 ppp1cc,LOC107567955,LOC105902522,LOC108259981 coding upstream 85714 25303537 ~ 25315212 (-)
G119466 NA non-coding downstream 168295 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 371518 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 605177 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 645340 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 2102119 23109601 ~ 23111520 (-)
G119557 NA non-coding upstream 44539 25262362 ~ 25333175 (-)
G119600 NA non-coding upstream 261187 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 354231 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 372749 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 387208 25605031 ~ 25606144 (-)
G119545 NA other downstream 26231 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 41995 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 129053 25075398 ~ 25084586 (-)
G119144 NA other downstream 2407301 22804345 ~ 22806338 (-)
G118936 NA other downstream 3099944 22080464 ~ 22113695 (-)
AMCG00018929 NA other upstream 1233901 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1559812 26777635 ~ 26797720 (-)
G119827 NA other upstream 1595657 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 2013050 27230873 ~ 27242574 (-)

Expression


Co-expression Network