AMCG00018905 (vps29)


Basic Information

Item Value
gene id AMCG00018905
gene name vps29
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25238897 ~ 25244280 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018905
ttgaattacttttaatttctaaaaaaatttttttcttgtctcactttttgttgttgttgtttaatcttTGATCATGTTCCTCATCCCCACCCCTGTCTACAATCAACCTCTGCATTGCATTCAGGCTGGTCACAGATTGGTGCTGGTGCTAGGAGACCTTCACATCCCCCATCGATGCAACACTCTGCCGGCAAAGTTCAAGAAGTTGCTGGTCCCTGGCAAGATCCAGCACATACTCTGCACTGGCAACCTGTGCACCAAGGAGAGCTATGACTACTTGAAGACACTGGCTGGAGATGTGCACATCGTCAGGGGAGACTTTGATGAGAACCTGAACTACCCCGAGCAGAAGGTGGTGACGGTGGGGCAGTTCAAGATTGGGCTGATTCATGGACACCAGGTCATCCCCTGGGGTGACATGGCCAGCCTGGCTCTGCTCCAGAGGCAGCTGGATGTGGACATTCTCATATCTGGTCACACACACAAGTTTGAGGCTTTTGAGAACGAGAACAAATTCTACATCAACCCTGGGTCAGCCACGGGGGCTTACAACGCCCTGGAAAGCAACATCATCCCCTCCTTCGTGTTAATGGACATCCAGGCATCGACAGTAGTAACGTACGTCTACCAGCTCATCGGAGATGATGTCAAAGTAGAGAGAATTGAATACAAGAAGTCCTAAAGAAAATGTTGTGAGGTCCTGGCGAATTTGTATCGtttcattcctttatttttatttctttcagctGAAAAGTGTCACTACAGAGTTATCGCTGTACCATCATTtggctataaaaaaaaatgtatgtctgCAGTATTCACTTCTGATTTAGCAGTTTACAGAAAGTATAAGATAATGGaatatggatttatttaatgtcattAAAGAAAGACATGGtgccacttttttttccttttgtttaaaaaacaactatcTTGTCATGTAAATACccttttaaaattgattaactTAATATGTAGATCATTCTTTCACTTCACTGTTTGCATCTATTCTCtctataataaaaagaaattaaCATTGGATAGacattggattttatttaagtCTTGATCTGTATATacacttaaatatataatgcagaGAACATATTTCTCTCAAAATCATGTAAGGATGCATTCTTTAAGGGAAAATATGCTTAGTATAACAAAACTGGTGAGTTTTTCTCAGACAAGATTCACATAGATCCAAAAATGTGAGAAAATTTGACAATGTAGATGTAGTTTATTCCTTTTTGATGCTAATATGAATATTGGTTtgaaattataaagaaaaactgACCATTACCGGTATCTTGGTATTGTTCCTTcactctttctttttctatatAGTTAGAAATTACTATTTGTACTTTGAACAGAACTAATTGCATGTTTTCAGTGGATAAGGAACCTGTTCTTTTCAGCCGCCCTTCCCTAATCACGCCTTGCTTTCAGACTCCGTGACTGTCCAATGGTAGAAACTGAACTGTATACACTCCCTTAAGAGAACAGTATTGAACATAGATGCAGGTGACCTGAGGTTCACTATGAAAGATGCTGATATGTGTTGAGTGGGGAGTCATAATTTCTCTTCCTCGTTTGATACATTACTTGGTGCTCAAATCTCCATCCATTAAGACTGAATTTTGACACTGTAAGAAACCTCAGCAtgatctaaaaaaatatattgatacgTACTGGAAGAAGCCATTTTTTGTATTCCCTTTTCTGTTTgtactgcaaaaataaaagcatcatagtcacacaaatgtttaattgcatgGTATACAAGCAGAAATGTTCATGGGCATAAACttgcatttattattgaaattatcATGCACAAAAAGATTTCGGTATGAAACTGCCAGGTTGGAATTGCTAGTCCAGGTATCTACAGTATGGTATGAATAGGCTTGTGCAGCATGTAGTTGTTAATACTCATGGATTGGATTGAAGTGTTTCACAGGATTTTCTCCATTACTCAACAACAGAGGTTTATTTTAAGTAGCAGGCAGATGTTCCCAGTCAGTAGTTCTTCTCTAGTCTTCTTGTGCTTCTCACTGAGGTCCTCCTGAGCTTttgtatctgaaaataaataaatgtgaaaattagGGTACATATTGCAGTAATAGAAAATagctttttttgtatgtatggcTGAGTAGTGGCAGACGGTAAATGTAAACTCATTATTACTTAAGTTTCCAGTTCTGTTTGGTCGGTTTAATCAAATGCTGGTAAAAGGTTTCACCATGCAACCCCCGCCCCCCTAGaatgtattacatttcacagttaCCAAGATTACCTAGATGTTTAGCTAACTACCTAAATAAGACAATGTAAAAGCTGTACAGTTAAAGCAAAGGGCATTTGCTTAGTCTTGCCTTTAATAGTTGCATTCTTTACTCCATTAACATTTGTCCTCATTTTTCTGgggtttctttcatttgatgaTGAAATGCAGGATATTgtgctgtaaaaTTTCTGCTATCCTGGGGAAAATCACTTTCCCAGTAGGAAGGTCTGCTCTGTGCATGTCCCTGCTGGTCTTGGGCTTGCTGTGAGACCTGGGATCAGTCTCCCTGCCTGTGTCAAACATGTGCTTTTCTTGATGAGGCAAATTTACTCCTGGCTTCCTGTTTTCCCTTGAGGCGCTGTGACCTACGGACAGcagtagtgtttatttttggaaggCAAAGTCCATGGGATCGGTTCTTTAAAATCTAACTCTCTCCACACTTTTCCCCATTGCCTGTCGAGTACCTGTTTGCATGCATTGCTGCAGCACATTTACGTACTGTCGTCTCATTAGTTTCCGCATGTGATTGGTGCTGTAGATGTTGGCAATACTGCAGAGATACCGTTTTTGCCCCGTCGTCAAGCTGGGGTGCtg

Function

symbol description
vps29 Predicted to enable metal ion binding activity. Predicted to be involved in endocytic recycling; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS29 (VPS29 retromer complex component).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 29

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0015031 protein transport biological_process
GO:0010008 endosome membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004647 phosphoserine phosphatase activity molecular_function

KEGG:

id description
K18467 VPS29; vacuolar protein sorting-associated protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018905 True 2896 mRNA 0.39 5 25238897 25244280

Neighbor

gene id symbol gene type direction distance location
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding downstream 13038 25220104 ~ 25225859 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding downstream 21074 25213639 ~ 25217823 (-)
AMCG00018904 anapc7 coding downstream 35222 25193164 ~ 25203675 (-)
AMCG00018896 NA coding downstream 165781 25071542 ~ 25073116 (-)
AMCG00018895 bcr,LOC106579959 coding downstream 230955 24961078 ~ 25007942 (-)
AMCG00018907 pptc7,LOC107552188,LOC102794815,LOC107553043 coding upstream 22468 25266748 ~ 25285927 (-)
AMCG00018912 NA coding upstream 49824 25294104 ~ 25301702 (-)
AMCG00018911 ppp1cc,LOC107567955,LOC105902522,LOC108259981 coding upstream 59257 25303537 ~ 25315212 (-)
AMCG00018910 LOC108239856,LOC107385499,LOC103139559,LOC103366907 coding upstream 87021 25331301 ~ 25338053 (-)
AMCG00018916 NA coding upstream 245164 25489444 ~ 25533356 (-)
G119466 NA non-coding downstream 193553 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 396776 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 630435 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 670598 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 2127377 23109601 ~ 23111520 (-)
G119557 NA non-coding upstream 18082 25262362 ~ 25333175 (-)
G119600 NA non-coding upstream 234730 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 327774 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 346292 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 360751 25605031 ~ 25606144 (-)
G119545 NA other downstream 51489 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 67253 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 154311 25075398 ~ 25084586 (-)
G119144 NA other downstream 2432559 22804345 ~ 22806338 (-)
G118936 NA other downstream 3125202 22080464 ~ 22113695 (-)
AMCG00018929 NA other upstream 1207444 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1533355 26777635 ~ 26797720 (-)
G119827 NA other upstream 1569200 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 1986593 27230873 ~ 27242574 (-)

Expression


Co-expression Network