AMCG00018907 (pptc7,LOC107552188,LOC102794815,LOC107553043)


Basic Information

Item Value
gene id AMCG00018907
gene name pptc7,LOC107552188,LOC102794815,LOC107553043
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25266748 ~ 25285927 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018907
ATGTTCTCCGTACTCTCCTATGGCAGACTGGTTGCCAGGGCTGTCCTGGGCGGACTTTCCCAAACCGATAGCCGGGATTACAGCCTAGTGACGGCAAGCTGCGGCTTCGGGAAAGATTTTCGGAAGGGGATTTTGAAGAAAGGCATGTGCTACGGCGATGACGCCTGCTTCATAGCTCGACACAGATCCGCCGATGTCTTGGGGGTGGCAGATGGCGTGGGGGGCTGGCGGGACTATGGCGTGGACCCCTCTCAGTTCTCAGGGACCCTGATGCGGACGTGCGAGCGCCTGGTCAAGGAAGGGCGCTTTGTGCCCAGCAGTCCTGTGGGAATCCTCACTACGAGCTACTACGAGTTACTACAGAACAAAGTCCCTCTATTGGGCAGCAGCACGGCCTGCATCGTGGTCCTGGACCGGCAGAGCCACCGGCTGCACACGGCCAACCTGGGCGACTCGGGCTTCCTGGTGGTGCGGGGGGGTGAGGTTGTCCACCGCTCCGACGAGCAGCAGCACTACTTCAATACCCCCTTCCAGCTGTCCATCGCCCCCCCTGAGGCGGAGGGCGCCGTGCTCAGCGACAGCCCAGAAGCTGCGGACAGCTCGTCTTTCGATGTCCAGCTGGGAGATATTATCCTAACAGCCACTGATGGCCTCTTCGACAACATGCCTGATTACATGATCCTGCAGGAACTTAAAAAACTAAAGAACACCAACTACGAGAGTATACAGCAGACGGCCAGGAGCATCGCCGAGCAGGCCCACGAGCTGGCCTACGATCCAAATTACATGTCGCCTTTTGCACAGTTTGCTTGTGACAATGGACTGAATGTAAGAGGTGGAAAGCCAGATGACATCACAGTTCTTCTGTCGATAGTAGCGGAATACACAGACTAGTCTCGACtggaggggggcaggggggaggTCTCTTCTCGTCTTCCTCCCGTATCCTATTGTACTGTTTCCTGCTGGCAGGATCGGGGACATTCTCTCGCCCCCCCATTTTTCAGCTAAAATTCTCCCCCAAAATGTCCTACAGTCGAAGCTGTCTAGACTGCTAGCTGGAAGTGTAAAAACTCTACTTCCCTGGgccatgaatacatttgaatcttCAGGAGGTCTGCTCTGTGTGATCACCATGTGGTTATAGAGATCGGGGGCTTGAAGCAGTCTAGCATTTTTAACCATTGCACACCAGAGAGGCAGGAAAAAAGCTCCTGTCATCATCActtgctgaacaaaacattgggattttttgttttgttactgccCCCATGCAGATGCCTGTCATTCAATCCCAGGTTCAGCAGGGGAGAGTCCTcctggcatttttttttctgctaaatCTCCCAATCCCTACAAAATCTaatcaaaaaaagaaatctgcatTTGAGAGGTTTCCCCCATTTCCAGCGGGAATGTGGGACTATAGCTGTGGGAGGAGTGAAGTGAACAGAAGAGTCTCTGTGCTTGATTGAAATTTCTGAGCTGAAACCAACGCCGTCAGTGACGGTGGATGAAGGAAGACACGCTTCTCAAATCAGAGTCATGTTTCAACAAACTGAGGTGTTGATGCCTTGTTGTGTGTGGGCCAGGGGGTGAACCACTCTAAGGTTACCAAGGTGTAATTTGTTTAGTCACGGATACTATATATCCCGGCCTGGTTTGTCGTCGGAAGTCTTGGAGGTGAATGGCGGATGCCAGCGAGGGTGTGGCAGTAAGTGGATTGGATGTGTTCGCCTGAGTCGCCTGGCCAGTCTAGAGGGCTGGGAAAAGGCGCTCTAAGCTCCACAGAGCAAAGGGTGTGTTAGGGGGTGCTCTCAAGGTCAATTAATGTCTAAAttaggaaaaaggaaaaaagaaaaaaaaaaaa

Function

symbol description
pptc7 Enables protein serine/threonine phosphatase activity. Involved in peptidyl-serine dephosphorylation and regulation of ubiquinone biosynthetic process. Located in mitochondrial matrix.

NR:

description
PREDICTED: protein phosphatase PTC7 homolog isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K17508 PTC7, PPTC7; protein phosphatase PTC7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018907 True 1870 mRNA 0.52 6 25266748 25285927

Neighbor

gene id symbol gene type direction distance location
AMCG00018905 vps29 coding downstream 22468 25238897 ~ 25244280 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding downstream 40889 25220104 ~ 25225859 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding downstream 48925 25213639 ~ 25217823 (-)
AMCG00018904 anapc7 coding downstream 63073 25193164 ~ 25203675 (-)
AMCG00018896 NA coding downstream 193632 25071542 ~ 25073116 (-)
AMCG00018912 NA coding upstream 8177 25294104 ~ 25301702 (-)
AMCG00018911 ppp1cc,LOC107567955,LOC105902522,LOC108259981 coding upstream 17610 25303537 ~ 25315212 (-)
AMCG00018910 LOC108239856,LOC107385499,LOC103139559,LOC103366907 coding upstream 45374 25331301 ~ 25338053 (-)
AMCG00018916 NA coding upstream 203517 25489444 ~ 25533356 (-)
AMCG00018917 NA coding upstream 261615 25547542 ~ 25553092 (-)
G119466 NA non-coding downstream 221404 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 424627 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 658286 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 698449 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 2155228 23109601 ~ 23111520 (-)
G119600 NA non-coding upstream 193083 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 286127 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 304645 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 319104 25605031 ~ 25606144 (-)
G119655 NA non-coding upstream 432659 25718586 ~ 25718976 (-)
G119545 NA other downstream 79340 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 95104 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 182162 25075398 ~ 25084586 (-)
G119144 NA other downstream 2460410 22804345 ~ 22806338 (-)
G118936 NA other downstream 3153053 22080464 ~ 22113695 (-)
AMCG00018929 NA other upstream 1165797 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1491708 26777635 ~ 26797720 (-)
G119827 NA other upstream 1527553 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 1944946 27230873 ~ 27242574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding CI01000304 null 6298705 ~ 6315061 (-)