AMCG00018909


Basic Information

Item Value
gene id AMCG00018909
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25287408 ~ 25294157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018909
TTAGCAACCTGTTTACGTTGAATACGAAAAAATGGCGCTGTTGCTATGGACTtcaattttctgtatttttgcgATCACCGCTCATACACAGGTTTCTACTACATTTCAGACACCCACCGGCGATATCAGCACAGCATCTGTAAAAGGTAACGAATCAGTTACCGATGTAAAAGAACTGAACACCACAACGGAGATCGCTGCTCCATCCGTCCCAAAAACAACAGGAGCGGGTCCCCAATCGGCGAGCACCGGGGAAACAGTAAAGGTGGACACCACCACCAATGCTACAGAAGCGACTCTCACAGTCTCCCCGTCGAAAACGACAACCCGGACAACAATTCATTCAACCGCAATAACTACAACCACGGTCCCCTCCACGAAATCGCTGCCTCTCTCCGGTGCCCTCCCTCCTCCGATAACTAACCtttccctCTTGTGTCCGTGCAATACGATGGACAATCAATGCGATGTCAACTGCTGCTGCGACCTGGACTGCGCTGGAGACCTGGCGCTTTTCACGTCTTGCACGGTGCAGAAAGTCATTGCTGACCCCCAGCTCTGCAGCCAGCAGGCTGTCCTCTACTCTTTGAACACGACTGCGGACGGTTTTGCACAGGTACAGTCCACTGCCATGGAGGAGGTCAACCCAAACGTCTTCTGTATACAGACTGCCAACTATATGGCAGCCCTGGAATTTGCCACCCCAGAGGTGCCCACTGAGGGTAACTTCGACAGTCTGTTCCAGAAATTCGTTGGGTTCTTCTTCAGCTCTTCcagtgggagagagacagatgttGTCTCGAGCAGAGCAAATGCCCAAACTGCCAGTGGCTATCTGTATGCCGATGTAATTCAGACAGTAGACAAAGATGGGATCCAAGGATTTCTCACGCTGCCAGCCCCCTCTGTCACCTCTCAGTGCACTGACGCTAACCCAGCTGACTGTGCCAACGTGCCTGCCCTGAGCCCCCACAACTACCTGCAGGACAGAATCCTCTCTatgaAAAACAATGGCAGTGAGCTTGTCAACATCTGGGTGAGCTCTGTGACACTGCAGAGCCTCAATGGGACGCGCATTCGACTGAACTCCACTGACATCACAGCCTACAGCCCGGGATGGGACAAAAACTCTGTTATCTACGAGATTGAATACCATGAAACCGGGGCCATTGTGAATGCAAAAGTGGCCTTTACTCTGGGTGCAGTTGACCGTGACATGCTGCCACTACAGCAGGactttcaaattattttcacgCAGGCAAGCACACATCCAGTCCCCTTGAGTGGAAATCCTGGCTATGTGTTTGGGCTCCCTCTAGTGGCTGCTGGTCACAAGCAGAATACTGCGCTTTGGGTTTTGTCCTTGACCGTCTCTTGCACGTCTGGCATTTATCAGAGTGCAAACCGGTTTGGGGGACTGACCGTCCTGAAAAGTTCAGGCATTCAGGACTGTCTGAACAGCTCTGGGGAGAGGAGTCCAGTCCTGTTTGGGGTGAACGTGGTGTCAGGATGTACGCTCAGGGTGGACAGCTCTGACAATTGCACAGTGCTGTCTGAAGTGATCCTGGGAGTGCTGAGGGGACAAAGTTTCCCCCAGTACGTGGCTTCCTTTGGGAACTCTCAGCCCCAGGAAGTCTTGGACTGGGTGCCAATCAAGACTGTGAGCAGCGTGTTGAGTGCCCCGAGCTGTAGTGTTCCCCTGTCTGTTCACCTCGAAGTGAGATGGACTCTGTATGGGTCCCTGGTGAACCCACAGGCTCAGATCGTCAACGTGACTGAAAGGATCTCGGCTAACTCCAGTAACTTGCAAGCTCTGGCTGAACCATCTGGGCTTCTGGGACTTTCCAGCACGGTGACGTTCATTGCAGTGTCTGCCCCAGCCCAGCCGGAGTACAAGGCCCCACCCACCATCGATGCCTCACTCCCCTTCGACTTCTTCTTCCCCTTCGTGTGACGGACAGGTGCTGGGGGTCTCTTAGGAGGCGGGCTGTAGAGCTGGACTGATGTATACTAAGGTCTCTTCCCTAGCACCTCTGCACTGAAACCTCCAGGGAAGGGCTGTTGCAGAAATTTGATTGTATGTAACTGGAACACTGGACATCACTGAAAGGGAAGATACAACACACTagagcaggggtctccagcTCCATTCCTGGCTTTTGTTCCACCCCAGCCTTCAGTTACAGGCCCAAGCTGATTAACTGCAAAACGTCAGACCATCAAATCAGAACAACTTGAAATGTCATTCGTCAGGATCttaatttgcattcatttgCAGACCACATCCTGTTGTCGAACCAAAGCCTAGCCCCTCCAAGCCTATCTTTTGTGCAGCTACTACAGTCCTGTGAGCGAGTGAAAACCCAAAGATGATCTGGATTGTTCCATGTTTGTTAATGATTGTCAAGTAGGTCCTGATCATTTCTAGTGTGTTTGTTCTTTTCCTCAGAAAGCCCTTGAGGatgtaaaaactgtaaatggTGTCACTAcagactatttatttttgaaatgtcaaTGATGTATATATCTGAATGGTTATTTTTGTACATGTTGGGGTGTGTTTTGATACAGCTTTAATAAACTTTTAATATCATATTGCTTGAACatgat

Function

GO: NA

KEGG:

id description
K19382 TCTN1_3; tectonic-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018909 True 2610 mRNA 0.50 14 25287408 25294157

Neighbor

gene id symbol gene type direction distance location
AMCG00018900 NA coding upstream 26126 25245645 ~ 25261282 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 74253 25203672 ~ 25213155 (+)
AMCG00018902 LOC103365013,LOC102776280 coding upstream 98566 25171485 ~ 25188842 (+)
AMCG00018908 NA coding upstream 142610 25136587 ~ 25144798 (+)
AMCG00018897 LOC106585468,LOC104958862 coding upstream 169989 25091131 ~ 25117419 (+)
AMCG00018915 NA coding downstream 239946 25534103 ~ 25544880 (+)
AMCG00018914 NA coding downstream 261299 25555456 ~ 25582394 (+)
AMCG00018918 mtfp1,LOC102779258 coding downstream 290159 25584316 ~ 25592691 (+)
AMCG00018919 NA coding downstream 307762 25601919 ~ 25611337 (+)
AMCG00018921 med13l coding downstream 334580 25628737 ~ 25642468 (+)
G119429 NA non-coding upstream 436358 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 451699 24799950 ~ 24835709 (+)
G119419 NA non-coding upstream 477589 24807747 ~ 24809819 (+)
G119354 NA non-coding upstream 688394 24537666 ~ 24599014 (+)
G119523 NA non-coding downstream 9029 25303186 ~ 25313495 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding downstream 37233 25331390 ~ 25338189 (+)
G119574 NA non-coding downstream 191688 25485845 ~ 25488149 (+)
G119669 NA non-coding downstream 745122 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 813312 26107469 ~ 26107849 (+)
G119507 NA other upstream 19627 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 3389708 21848370 ~ 21897700 (+)
G118815 NA other upstream 4098162 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4514822 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 4592214 20679280 ~ 20695194 (+)
AMCG00018913 NA other downstream 171934 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 384520 25678677 ~ 25718426 (+)
G119762 NA other downstream 1166463 26460620 ~ 26461227 (+)

Expression


Co-expression Network