AMCG00018911 (ppp1cc,LOC107567955,LOC105902522,LOC108259981)


Basic Information

Item Value
gene id AMCG00018911
gene name ppp1cc,LOC107567955,LOC105902522,LOC108259981
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25303537 ~ 25315212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018911
TCGCTCCGCCGCCCGGCGACGACGGGAGAATAGAAGCTGtcgccattttttttttttaattccaagcAAGTCGTTACGGTGTGGGTGGACGGAGGCATAAGTGTCGTTACGGCCTTGTTGTGTTTTAGAGTGAAATAAGAGTGCATTACCAAAACggaagtgtatatattttgtttttatttgtttaaaatatatactgagcGCTATATAACCAAGCTATGGCCGATATCGATAAGCTGAACATAGACAGTATCATTCAGCGTCTTTTGGAAGTGAGAGGGTCAAAACCAGGCAAGAATGTACAACTTCAAGAAAATGAGATTAGGGGTCTCTGTCTCAAATCCCGGGAAATCTTCCTTAGCCAGCCTATACTGCTCGAGCTTGAAGCACCTCTTAAAATATGCGGTGATATCCATGGGCAGTACTATGACTTACTAAGACTATTTGAGTATGGGGGATTCCCACCTGAGAGCAACTACTTGTTCCTTGGTGACTATGTGGATAGAGGAAAGCAGTCCCTGGAGACCATCTGCTTGCTGTTGGCCTACAAGATCAAATACCCAGAGAACTTCTTCCTTCTACGTGGAAACCATGAGTGTGCCAGCATCAACAGAATATACGGCTTTTATGATGAATGCTTATCACCAGACCTCCAGTCTATGGAGCAGATCAGGCGAATCATGCGCCCAACTGATGTGCCAGACCAGGGCCTGCTGTGCGATTTGTTGTGGTCCGATCCTGACAAGGACGTACTGGGCTGGGGGGAGAACGACCGAGGGGTCTCCTTCACTTTCGGCGCAGAAGTCGTGGCGAAATTCTTACACAAACATGACCTGGATCTAATTTGTCGAGCCCATCAGGTTGTTGAAGACGGCTATGAGTTCTTTGCGAAGAGGCAGTTGGTGACGTTGTTCTCTGCACCAAACTACTGTGGGGAGTTTGACAATGCCGGCGCAATGATGAGTGTTGATGAAACACTCATGTGCTCTTTCCAGattttaaaaCCGGCAGAGAAGAAAAAGCCTAATGCAAGTAGGCCCGTTACACCTCCAAGAAATATGATCACAAAGCAAGCAAAAAAATAGGACATGCTGGCATTGCCCTGGTGGACTTGTAACATACAATctccatttttaaacaaaattaccctttttctgtaatgttttattgGTTGGCTTGCTTGGAATAGATTTTACTTCTCGTCTAGTGGTTTCtcaaacatgaaaaactgtTTGGTTCGATTTGCAACAGCAACTGAGAAGACTGCTACTTCAAGGTAAAGGGTGAAAGTGAATAGATTTTTCTAGATCTTCAGACTTCAATGGCTGTTTTCTCTTCAACAACTTTTGGGTTTATGTACTCGTTTGCAGCCAGTCTTCAACACATTTCAGAGCActttttacaatgtaaatgtcTCCGCCACCAATGGATTGTGCTTTGCTGGAAGCCGAGAAGACGCATCAGTCAAACAGGTTTCAGATAATAGACCTGCCTGTTTTTTCCACTATACATGATGGAACCCAACACAAACTGCTCAAACCACTGTGAAAAGTATTTGCATAGAATGAACTTCAGAACTAAGCAAAGACGATCCCATAAGGATTTTAGTTAAGTTTTATTTCCCACATTTGACACACTTGTCTTGTGTAGTGATCAGAAGTAATAATGATTCCATCTGCTCCCATCACTGAATTGGTGTATTTTAAGCACACTTCCTGTACTGTATACTTCAAATGAATAAAGCAATTCTTTTAGATGTTGTCTTTCTCTTATTAACACTTCaccatttcacatttaattttatatttcagatCATTGATCCCCTGTAAATTTCACACATTGTAAGGGAGTGCATACTATCACtataacaaaatgaattaaGACTCTTTATCAGCGTTTTTCTTGGCTTAACAccagtatacattttataattagtcATTTTTAACAAGATGCCTTgccttattttgtttcttttgaatgTGACACTTATTCAAGATGATTCCTTATGCAGCTTTCAGTACTAGACGCAGGTTGCTCCACTTTAAGTAAAGGCATGTAACACTTTCTAaagaggattgttttttttgttgcatGTCTCTAGCATTAGTAGTATAATATGTAAGGTCCCTTTTCCTTCAAGGcatgtctgttttctgtcttaaagCTAATATagctctttatttttcttcaggtATTGGTAACTTATCACACCTTTAGAGTTTTTCATTAGAGAATGATTTCATTTCAATCTCGTCTTCTGTCTCACTGAAaatcttttgtgtgtttgtgtgtatatataccttGCATAATTTTGTCCAGCATTGGCAATACCTTGTATAAAACCTCATGAGTTCaaattttccacatttaaactattgtatacatgtttaataaagaCTGTGGGGATTGTGTatgttgggg

Function

symbol description
ppp1cc Acts upstream of or within angiogenesis. Orthologous to human PPP1CC (protein phosphatase 1 catalytic subunit gamma).

NR:

description
PREDICTED: serine/threonine-protein phosphatase PP1-gamma catalytic subunit B isoform X1

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018911 True 2421 mRNA 0.40 6 25303537 25315212

Neighbor

gene id symbol gene type direction distance location
AMCG00018912 NA coding downstream 1835 25294104 ~ 25301702 (-)
AMCG00018907 pptc7,LOC107552188,LOC102794815,LOC107553043 coding downstream 17610 25266748 ~ 25285927 (-)
AMCG00018905 vps29 coding downstream 59257 25238897 ~ 25244280 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding downstream 77678 25220104 ~ 25225859 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding downstream 85714 25213639 ~ 25217823 (-)
AMCG00018910 LOC108239856,LOC107385499,LOC103139559,LOC103366907 coding upstream 16089 25331301 ~ 25338053 (-)
AMCG00018916 NA coding upstream 174232 25489444 ~ 25533356 (-)
AMCG00018917 NA coding upstream 232330 25547542 ~ 25553092 (-)
AMCG00018920 NA coding upstream 281324 25596536 ~ 25600663 (-)
AMCG00018925 slc35e4 coding upstream 1029418 26344630 ~ 26356608 (-)
G119466 NA non-coding downstream 258193 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 461416 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 695075 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 735238 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 2192017 23109601 ~ 23111520 (-)
G119600 NA non-coding upstream 163798 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 256842 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 275360 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 289819 25605031 ~ 25606144 (-)
G119655 NA non-coding upstream 403374 25718586 ~ 25718976 (-)
G119545 NA other downstream 116129 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 131893 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 218951 25075398 ~ 25084586 (-)
G119144 NA other downstream 2497199 22804345 ~ 22806338 (-)
G118936 NA other downstream 3189842 22080464 ~ 22113695 (-)
AMCG00018929 NA other upstream 1136512 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1462423 26777635 ~ 26797720 (-)
G119827 NA other upstream 1498268 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 1915661 27230873 ~ 27242574 (-)

Expression


Co-expression Network