AMCG00018912


Basic Information

Item Value
gene id AMCG00018912
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25294104 ~ 25301702 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018912
GGAACTACTGCACTAATATAAATCATAACTAGACAGACAAGTGTCGGTAACACATTATTACAACAGGCAGTTAAAAGAGTTACAAATAGACTGACcgaatatatatctatatattgcTAACGGCCCTGTAGCATCAGCCATGTCTCGTTATCTGAGGCACTTCACAGCCGTGGGTGATGACAAACACACATTCGCGCGCTGGCATGACGAGGAGTTGCATGAGCCAGGGGATGAGGCGGGTGAGGCAGCGCCCCCCCTAGAACGCAATGCCACCTTCCGTGACAAGCTGCGCGGCCTCTTCGGCTCCGACAAGTTCCAGATCTCTGTGGTGTGCCTCGTTATTCTGGATGCTATCTTTGTGCTCGGTGAGCTACTAATGGATCTCTCTATCATTAAGGCAGACCAGCACAAGATAGCCCCCCAGGTGTTTCACTACTTGAGTCTGGCCCTGCTCACTTTCTTCATGGTGGAGCTGGCGGGGAAGCTTTATGCATACCGGCTGGAGTTCTTCAAGCACAAGTTTGAGGTGTTTGACGGGGTGGTGGTCATCGTGTCCTTCATCCTGGACATAGTCTACATCTCCCATGAGGACGCTTTTGACGGCATGGGCCTGCTCATCCTGCTGCGTCTCTGGAGGGTGGCTCGCATCATCAACGGGGTTCTGGTGTCAGTGAAGACGCAGGCTGAACACAAAGTAGAGAAGCTGAAAACAGCCAACGAGCACCTCACACAGCAGGTCCACGAAttgcaacaacacaaaaaccGAACGgAGCAGGAAAATGACCGATTACGCACTCTGTTACAGCAACATGGAATTAAATTCTAGGTTGTGTTTCGGGGAAAGATGGACCAGTTTCTGCAGATCTTCCcaccaaaaataagaaaaacattattcacCTCTAAGTATAAAATCCACAGTGGGATCCTTGGAAAGCACGGTGGCAGGTCaagaattatgtattttctaatGTGATGTTATTTGGTTTATTAACAGTATAGAGTAATGAAAACCCATGCTTGTAGTACAGTTGAAAACTACAATGTATAGAGAGAATTATCAATGGAGCGTAAAAAAAAGTGAACTTTTCTGCTGAAACTGTACACTCCATTTAAAAAAGGCTCTGATATTAAAGGGAGATCTAAACTAAATCCACTGCAGGCTGGCATGGCTGTAGTCAAGATTGAGTgctattttaatgagatgtggTAACTCAGACTTAAAGGCAATGCAGTGTGTACTGTAAGGGCATTGTGATAATGTAGCTCATGTatactgaaatatgtaattgtgaAAGCCAGGTTGCAAATGTATATGTACTTACTTTGTGTTACTTTAATTGCCACCTCTGCACTTGTGACTTGCCTCAATTGTACCACAACTGTTTATACAATTATTCTCTTCTATGCACTATTGTGTACAGAAACTGCCTAATATAAGTCTAATATGATATGAGTCCAGTGCTATGAAGTGGTGAGTCTTTATTTAGGATTtttcaaaggaaagaaaatcatGTTCAAGCAATATGATATTAAAAGTTTATTAAAGCTGTATCAAAACACA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K22644 HVCN1, HV1; voltage-gated hydrogen channel 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018912 True 1561 mRNA 0.43 6 25294104 25301702

Neighbor

gene id symbol gene type direction distance location
AMCG00018907 pptc7,LOC107552188,LOC102794815,LOC107553043 coding downstream 8177 25266748 ~ 25285927 (-)
AMCG00018905 vps29 coding downstream 49824 25238897 ~ 25244280 (-)
AMCG00018906 gpn3,LOC106566318,LOC106563155 coding downstream 68245 25220104 ~ 25225859 (-)
AMCG00018903 arpc3,LOC107737855,LOC107707141 coding downstream 76281 25213639 ~ 25217823 (-)
AMCG00018904 anapc7 coding downstream 90429 25193164 ~ 25203675 (-)
AMCG00018911 ppp1cc,LOC107567955,LOC105902522,LOC108259981 coding upstream 1835 25303537 ~ 25315212 (-)
AMCG00018910 LOC108239856,LOC107385499,LOC103139559,LOC103366907 coding upstream 29599 25331301 ~ 25338053 (-)
AMCG00018916 NA coding upstream 187742 25489444 ~ 25533356 (-)
AMCG00018917 NA coding upstream 245840 25547542 ~ 25553092 (-)
AMCG00018920 NA coding upstream 294834 25596536 ~ 25600663 (-)
G119466 NA non-coding downstream 248760 25044951 ~ 25045344 (-)
G119426 NA non-coding downstream 451983 24836787 ~ 24842121 (-)
G119382 NA non-coding downstream 685642 24519413 ~ 24608462 (-)
G119384 NA non-coding downstream 725805 24566146 ~ 24568299 (-)
G119235 NA non-coding downstream 2182584 23109601 ~ 23111520 (-)
G119600 NA non-coding upstream 177308 25479010 ~ 25479524 (-)
G119615 NA non-coding upstream 270352 25572054 ~ 25578122 (-)
G119632 NA non-coding upstream 288870 25590572 ~ 25656954 (-)
G119637 NA non-coding upstream 303329 25605031 ~ 25606144 (-)
G119655 NA non-coding upstream 416884 25718586 ~ 25718976 (-)
G119545 NA other downstream 106696 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 122460 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 209518 25075398 ~ 25084586 (-)
G119144 NA other downstream 2487766 22804345 ~ 22806338 (-)
G118936 NA other downstream 3180409 22080464 ~ 22113695 (-)
AMCG00018929 NA other upstream 1150022 26451724 ~ 26485315 (-)
AMCG00018930 NA other upstream 1475933 26777635 ~ 26797720 (-)
G119827 NA other upstream 1511778 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 1929171 27230873 ~ 27242574 (-)

Expression


Co-expression Network