AMCG00018915


Basic Information

Item Value
gene id AMCG00018915
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25534103 ~ 25544880 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018915
CCGCTTTAATGTGTGGCTATTTTGACTgctcaaaatacaaaaaaagggaCAGGACCAAGTGAAACTTATAAAGTTAGCCTCAACACAgCAAGAGGCAATGGCGTGTGCACAGAGAGCACCATTGGACGAGCAACAGGTGACAGAGCCGAGCGGGCCGATGGGCCAGGCGACCACTTTACCTGCTCTGCACCCAAAGAGGATGGAGCAGCGGGGCTTTGTGCTGTACagacccctccccctccatgGCTCTCCAGCAGAGGTGGAGGAATTTGTGGAACTGTCCCAGTTTATCGTGGAAGACCTTGACTGGCTGTTGGCTCTGCCACACGACAAGTACTGGTGCCAGGTGGTGTTTGACGAGTCTCTACAGAAGTGTCTGGACTCTTACCTGTGCATGGCCCCCCGGGGTCTGGACAGCGCCCTGTACACCTCCCCTGCTGTGGCTGACATGCAGAAACGCCTCCATCGCAACATCTTCATGACCTTCCTCAGGATGGCAACACACAAGGAGTCCAAGGAGAACTTCATTACGCCAGCCGTGTTCGGGGAAATTCTCTACAACAACTTCCTGTTCGACATCCCCAAGATCCTGGATCTGTGTGTGCTCTTTGGGAAGGGGAACCAACAGCTGCTCCACAAAATGATCAAAAACATCTTTAATCAGCAGCCCGCTTACTACAGTGATCTGGAGGAGACAGTGCCCACTGTACTGCAGGCAGAGGGAGCCTCCGCCAGCCAGCCAATGAAACTGGGTGATCAGGGGCCTGCCAATGCCATGGACATGAAACAGCAGGACCTGGTGGACCTGGTGTTGTATTTGTGTGACACCTGCACCACTCTCTACTCCTTCCTGGATATCTTCCCCACTGCCTGCAGAACCTTCCAGATCCACGGCTTCCTCAGCAGGCTGGCTTCCTTTTATGAGCTTGCCATCCCTGACATTGAGAGAGCAGTGAGGAAGAGAAACTTTGACGACAAGAGCTCAGAAAATATTCAGATGTTTGTAGAAGATTTCCTGCAGACCTTCACATCTCTTCTCCCGGAAAAGAGGTTCCTTGCCGACTACGATGAGCAATTCTCCGTTGCGGATGATATCTCGCTACTACAACAGGCCTCCCCACTTCTAGATGAGACCAGAACCTCATACCTCCTGCAGGGGATTGAGAGTGCTTGGGAGATCTTGGGCAGGAAAAAGCACAGACTGCCCCCATCTCGGCCCGCCCAGACCGACGCCCATGAGGGTGGGGCTTCTTGGGAGAGTGGCGGGGCCTGTGCAGAGAGGGGGCAGGCTGATGGGTTTGGGGGCGGAGCAGAAGCACAGCCCGATTACCACCAAGAAGTTGGCGTATTACAGGGCGCGGCATGCATGGTGAGCTCAGGGGAGCTGGAGTCACTCTTGTCCCACGTAAAGGAACTCTTCCCCGACCTGGGAGAGGGCTTCATCCTTGCCTGCCTGCAAGAGTATGGCTACAGCTCCGAGATCGTCATCAACAACATCCTGGAGGACAACCTGATGCCCAGCTTGGCCCAACTTGACCGCAACTTGCCCAGGCCGGTCAAGGAAGAGAAGCCTGCAGTGTTGAGCACCAGGTCCAACGTCTTTGACGACGATGAGTTTGATGTCTTCAGCCGAGACCAGGTGGACACGTCCCGGATCTGGAAGGGAAGGAGGCAGGGGGAGAGTGCCCGTGAGCTGCTGAACGATAAACAGCACATCGAGGAACAGAGGGCCCGATACCAGGCCTACCAGACGGTGGTGGACGAGGTGCTCGTCGGAAAGGGGGAACCGGGCAGCGATATCTATGGCTATGACTATGATGATGAGTACGACGACACGCCCTTCATCACCCCGCTGGTCCTACGCATGGGAAAGCAAGAGGATggcaaggaggaggaggatgatggagatgaggaggaagaagaaaagGATGATGCTGTGAAGAGGGACCACTTTGTACAGGACCCTGCCATGCTGAGGGAAAGAGCCGAGGCCCGCAGAGCCGCGATGCACAGCAGGAGAGGATTCAGACCGGAGGGGTCCAGCAACGTGGCAGGCGGACCTAGAGGCCAGGGCCAGAGTAAAGAAACCATGCAGGACAGACGCAAGAAGGAGGCGAACAAGAGCGGCCGTGCCAACCACAACCGCAGAGCCATGGCCGACCGCAAGAGAAACAAGGGCATGATCCCCTCCTGATGCCCGTCTGCACTAGAGACGCCTCCCAGTCAGTGTGCAATGAGGAGGGAGGGGAGTCAAAGGGGCTGAGGGTGAGAAGACACCACCGATTCCTCTGGCTGACCTGAGCTCTGTTTATATGTCTAATTAATTATCTtgcagagagagacatacattttttttattattatttgtatccaaAGTtccaaaaaagggaaaaaaattggGGCTGCTGACCTTGAATACAGCTGCCGATTCCAAAGCTTTTCCCTCTTCCAACATTTTTACCCcctaaatgcaaaattaacacTTAACAAGAGGAGGGAGAATGGGGTGTAACAAGTGGACTGTGACGAACGGgtatttcagaataaattcGCTAAGACACTCTCAGGAAAAACAAGACCATGCCACAGAACTGGACGGAGCAAGTGAAACCTTCATCACTTCATCATCCAAAGTCCTCTTTAATGTCctgcctatttttatttttatgcctTGTATCAACTTGTTataaattctgttttgtttcctcatcagttacatattttaaacttgcAAAGTTTCCTAATTAAGAGATGTTTCCtttataaactaaataacaTTCCCTTAGACACACTaccatatttaatattaataataataaacatagtAATAATCTgttgcagtttttgtttgtttaaaagtcAAGAATGGCACAAATTTCATCAGACAGAAAgcaaatttttttttaatacagatggaaaataaaatatgaaaaacactgTGGATCTTTGTACTCGGTTAGCTTGCTCTG

Function

GO: NA

KEGG:

id description
K18667 ASCC2; activating signal cointegrator complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018915 True 2969 mRNA 0.51 17 25534103 25544880

Neighbor

gene id symbol gene type direction distance location
AMCG00018909 NA coding upstream 239946 25287408 ~ 25294157 (+)
AMCG00018900 NA coding upstream 272821 25245645 ~ 25261282 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 320948 25203672 ~ 25213155 (+)
AMCG00018902 LOC103365013,LOC102776280 coding upstream 345261 25171485 ~ 25188842 (+)
AMCG00018908 NA coding upstream 389305 25136587 ~ 25144798 (+)
AMCG00018914 NA coding downstream 10576 25555456 ~ 25582394 (+)
AMCG00018918 mtfp1,LOC102779258 coding downstream 39436 25584316 ~ 25592691 (+)
AMCG00018919 NA coding downstream 57039 25601919 ~ 25611337 (+)
AMCG00018921 med13l coding downstream 83857 25628737 ~ 25642468 (+)
AMCG00018923 tbx3,LOC106563287 coding downstream 520763 26065643 ~ 26077262 (+)
G119574 NA non-coding upstream 45954 25485845 ~ 25488149 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding upstream 195914 25331390 ~ 25338189 (+)
G119523 NA non-coding upstream 220608 25303186 ~ 25313495 (+)
G119429 NA non-coding upstream 683053 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 698394 24799950 ~ 24835709 (+)
G119669 NA non-coding downstream 494399 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 562589 26107469 ~ 26107849 (+)
G119684 NA non-coding downstream 567992 26112872 ~ 26113131 (+)
G119703 NA non-coding downstream 731505 26276385 ~ 26276585 (+)
G119750 NA non-coding downstream 897313 26442193 ~ 26444060 (+)
AMCG00018913 NA other upstream 48657 25466091 ~ 25485446 (+)
G119507 NA other upstream 266322 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 3636403 21848370 ~ 21897700 (+)
G118815 NA other upstream 4344857 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4761517 20723610 ~ 20772586 (+)
AMCG00018922 med13l other downstream 133797 25678677 ~ 25718426 (+)
G119762 NA other downstream 915740 26460620 ~ 26461227 (+)

Expression


Co-expression Network