AMCG00018929


Basic Information

Item Value
gene id AMCG00018929
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26451724 ~ 26485315 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018929
ATGTACTGGGACAGGTCGCAGCTGCTGATGCTTGAATATAAGCGGAACTCCTATCTAAAGGAGGTGAAGACACTCGAGGAggaactgggcctgctcaggaGACAGTGTTCTGCCACACAAAGCAACCAGGTGGGAGCCCTGCAGAGTGAGTTGAGTGCAGAGAAGGAGGAGTTGAGGTCACGGCTTGGACACAGGGAGAGCAGCCTATACCTAcaagagagagaagagctggAGTACCAGCTGTACAATGTCAAGAGTGAGCTGTTTGCCGAGCAACGCAGAGGACGAGAGAAAGTAGAAACTCTGCAGGAGGTTCAAAATGCTTTGATCCAGCAACAGAACCAGTGGGAAATAGAGAAAACAGAAGAGCTCAAAAAGCAACATGAGATACTGGAGGAAGTGAGCAGGAGGGCCTTGGAGACTGTAAAAGAAgagcaagaaagagagaggagaaataTGCTGTCCCTGCAGAACAAAGTAGTGGAGTTCCAGAATAAGGTGCAGGAGGTGCAGTGTGAGAGACGGTTAcagcaacaagaacaacaggTGGCCCAGAACACAATATGTGGTGCACTGAGAGAGGAGCAGCAGAGGGAGATACTCTGCCGCCGGCAGGACTTACAGCAGgacaaggagagAGAGCTGGATAAGCTCAGGCTGGTGCTAGAGCAGGTGAAGGAGGAAAATGTGAAGCTGCGAACGAAGCTGACCAAAACTGCTCGGAGAGAGGAGGAGGCCCTGGCACAGGCTGAGTGCCAGCACAGGGCATGGGCACTGGATCTGGTCATGCAGTGCCAGCGCATTCAGGAGCTACTGCCCCAAACAGGGGCAACAGGGAGCCCCACACACCTCCCATACAGGCTCATTGATCAGCTGCACAGCCACATCAAAAAACTGTACCAGGACCAGGAAACACAGAAACGTTCTGTGCAGCAAATCACCAGAGACAAGGAGCATGTGGAGGAGGTCAGTAAGCTGCAGCGGACCAAGATGAAGGAGAGCAGGGGTGGAGAAAGCCAGGTGCTAAGGCAGCAGCTATGGCAGAAGGATGAAGAGCTGAGAGCCATCCAGAGGAGCATGAGCCAGTGGAAAGACCAGACGGCTGCCAAGCTGGCCCTCAAATTTGAAGAAGAGTTCACCTCAGAGCTGGAGAGGTAA
>TU150088
caagaacaacaggTGGCCCAGAACACAATATGTGGTGCACTGAGAGAGGAGCAGCAGAGGGAGATACTCTGCCGCCGGCAGGACTTACAGCAGgacaaggagagAGAGCTGGATAAGCTCAGGCTGGTGCTAGAGCAGGTGAAGGAGGAAAATGTGAAGCTGCGAACGAAGCTGACCAAAACTGCTCGGAGAGAGGAGGAGGCCCTGGCACAGGCTGAGTGCCAGCACAGGGCATGGGCACTGGATCTGGTCATGCAGTGCCAGCGCATTCAGGAGCTACTGCCCCAAACAGGGGCAACAGGGAGCCCCACACACCTCCCATACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018929 True 1158 mRNA 0.53 7 26451724 26485315
TU150088 False 326 lncRNA 0.58 2 26457381 26457825

Neighbor

gene id symbol gene type direction distance location
AMCG00018926 NA coding downstream 40939 26367350 ~ 26410785 (-)
AMCG00018925 slc35e4 coding downstream 95116 26344630 ~ 26356608 (-)
AMCG00018920 NA coding downstream 851061 25596536 ~ 25600663 (-)
AMCG00018917 NA coding downstream 898632 25547542 ~ 25553092 (-)
AMCG00018916 NA coding downstream 918368 25489444 ~ 25533356 (-)
AMCG00018928 rasl10a,LOC106584972 coding upstream 138509 26623824 ~ 26625548 (-)
AMCG00018931 ap1b1 coding upstream 247952 26733267 ~ 26771289 (-)
AMCG00018933 gas2l1,LOC106580329 coding upstream 339947 26825262 ~ 26825957 (-)
AMCG00018932 NA coding upstream 359455 26844770 ~ 26869193 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding upstream 387579 26872894 ~ 26943014 (-)
G119713 NA non-coding downstream 108646 26319977 ~ 26343078 (-)
G119691 NA non-coding downstream 300653 26119422 ~ 26151071 (-)
G119685 NA non-coding downstream 338571 26112864 ~ 26113153 (-)
G119673 tbx3,LOC106563287 non-coding downstream 373320 26076658 ~ 26078404 (-)
G119672 tbx3,LOC106563287,LOC106566936,LOC107670392,LOC107566860,LOC107728866 non-coding downstream 383075 26020227 ~ 26068649 (-)
G119774 NA non-coding upstream 15686 26501001 ~ 26501920 (-)
G119825 NA non-coding upstream 325569 26810884 ~ 26812556 (-)
G119826 NA non-coding upstream 327799 26813114 ~ 26813426 (-)
G119891 NA non-coding upstream 737191 27222506 ~ 27278009 (-)
G119912 NA non-coding upstream 870510 27355825 ~ 27356032 (-)
G119545 NA other downstream 1264316 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 1280080 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 1367138 25075398 ~ 25084586 (-)
G119144 NA other downstream 3645386 22804345 ~ 22806338 (-)
G118936 NA other downstream 4338029 22080464 ~ 22113695 (-)
AMCG00018930 NA other upstream 292320 26777635 ~ 26797720 (-)
G119827 NA other upstream 328165 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 745558 27230873 ~ 27242574 (-)

Expression


Co-expression Network