AMCG00018931 (ap1b1)


Basic Information

Item Value
gene id AMCG00018931
gene name ap1b1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26733267 ~ 26771289 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018931
CGACTTCAATCGGTATCCATCCACGAGGCACAAGAACATACCGGACCGGTGctgcagtggaaaaacaaagagaGGAGAACTGAAACCTTGCAGACAAAATGACTGACTCCAAGTATTTCACAACTACAAAGAAAGGAGAGATCTTTGAGCTCAAGGCAGAGCTGAACAGCgacaagaaggagaaaaaaaaggaggCTGTGAAGAAAGTGATCGCGTCCATGACAGTGGGCAAGGATGTCAGTGCTCTATTCCCTGATGTGGTGAACTGCATGCAGACAGACAACCTGGAGCTGAAGAAGCTGGTGTATCTGTACCTTATGAACTATGCAAAGAGCCAGCCGGACATGGCTATCATGGCAGTTAACACTTTTGTCAAGGACTGCGAAGATCCCAACCCCCTAATCCGAGCACTGGCAGTAAGGACCATGGGCTGCATCCGTGTGGACAAGATCACGGAGTACTTGTGTGAGCCGCTGCGCAAATGCCTGAAGGATGAGGACCCCTATGTAAGGAAAACTGCTGCGGTGTGTGTGGCCAAGCTTCACGACATCAATGCCCAGCTGGTAGAGGACCAGGGTTTCTTGGACACTCTGAAGGACCTCATCTCAGACTCCAATCCCATGGTGGTGGCAAATGCTGTGGCTGCTCTTTCGGAGATTGCAGAGTCCCACCCAAACAGCAACCTGCTGGACCTCAACCCCCAGTCCATCAACAAGCTGCTGACAGCCCTCAATGAGTGCACAGAGTGGGGCCAGATATTCATCCTGGACTGCCTAGCCAACTACACCCCCCGTGATGACCGCGAGTCCCAGAGTATCTGTGAGCGTGTGACCCCTCGACTGTCTCATGCCAACTCGGCTGTTGTACTGTCTGCGGTCAAGGTGCTTATGAAATTCATGGAGATGCTTCCCAAGGACCTGGATTATTATGGCACACTCCTGAAGAAGTTAGCTCCCCCTCTGGTCACTCTGCTTTCAGCGGAGCCTGAACTGCAATACGTGGCCCTGCGTAACATCAACCTCATAGTACAGAAACGGCCAGAGATCCTCAAACATGAGATGAAGGTGTTCTTTGTGAAGTACAACGACCCCATCTATGTCAAGCTGGAGAAATTGGACATCATGATCCGTCTGGCTTCTCAGGCCAATATTGCTCAGGTTTTGGCTGAGCTGAAGGAATATGCCACAGAGGTGGATGTGGATTTTGTGCGGAAGGCAGTCCGAGCCATTGGCCGCTGTGCCATCAAAGTGGAGCAATCGGCAGAACGGTGCGTTAGCACGTTACTTGATCTCATCCAGACCAAGGTCAACTATGTGGTTCAGGAGGCTATCGTTGTCATTAAGGACATTTTCCGCAAGTACCCTAACAAGTATGAGAGTGTAATTGCCACACTGTGTGAGAACCTGGACTCCCTGGACGAGCCTGAGGCCCGGGCCGCCATGATCTGGATCGTGGGCGAATACGCTGAAAGGATCGATAACGCTGATGAGCTGCTGGAGAGCTTCCTGGAGGGATTCCATGATGAGAGTACACAGTTGCTTACAGCCATTGTGAAGCTCTTCCTGAAGAAGCCCACAGAGACCCAGGAGCTGGTGCAGCAGGTTCTCAGTCTTGCCACCCAGGCAAGGTTGATGATATTGCAGCATGCTTCTGAACCAGGAGGTGTCAATATCAAGTTCTTCAGAAAGGTGGCAGCCAAGGAGGTGGTCTTGGCTGAGAAGCCCCTGATCTCAGAGGAAACTGACCTGATTGAACCCACTCTGCTAGATGAGCTCATCTGCCACATTGGCACCCTGGCCTCTGTTTACCACAAGCCTCCCAGTGCTTTTGTGGAGGGCAGCCGTGGGGTGCAGCATAAGCGCCTACCACCCAGGAATGGATCGAATGAGAGTACCGAGAGCCCGGAGGCAGCCCCAGCAGGGGGACAGACCTCTGAGCCATCTCCGGCTGTCATCCCCTCCCAGGGAGACCTGCTGGGAGACCTGCTTAATCTGGACTTGGGCCCACCTACCAGCGGCGGCACCCCTGCCCCTACGTCGGCCATGCAGATGGGTGCCATGGACCTGCTGGGTGGTGGGCTGGACAGCCTGGTACCTCCCACTGctaattttagattttgttgCCAAAGCTCTTTATGGGGGATGACACAGAAGCGGTAA

Function

symbol description
ap1b1 Predicted to enable clathrin binding activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception; regulation of sodium ion transmembrane transporter activity; and sensory organ development. Predicted to be located in membrane. Predicted to be part of clathrin adaptor complex. Is expressed in brain; eye; female organism; inner ear; and otic vesicle. Orthologous to human AP1B1 (adaptor related protein complex 1 subunit beta 1).

NR:

description
AP-1 complex subunit beta-1 isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0035315 hair cell differentiation biological_process
GO:0048839 inner ear development biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0048884 neuromast development biological_process
GO:2000649 regulation of sodium ion transmembrane transporter activity biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12392 AP1B1; AP-1 complex subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018931 True 2159 mRNA 0.53 16 26733267 26771289

Neighbor

gene id symbol gene type direction distance location
AMCG00018928 rasl10a,LOC106584972 coding downstream 107719 26623824 ~ 26625548 (-)
AMCG00018926 NA coding downstream 322482 26367350 ~ 26410785 (-)
AMCG00018925 slc35e4 coding downstream 376659 26344630 ~ 26356608 (-)
AMCG00018920 NA coding downstream 1132604 25596536 ~ 25600663 (-)
AMCG00018917 NA coding downstream 1180175 25547542 ~ 25553092 (-)
AMCG00018933 gas2l1,LOC106580329 coding upstream 53973 26825262 ~ 26825957 (-)
AMCG00018932 NA coding upstream 73481 26844770 ~ 26869193 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding upstream 101605 26872894 ~ 26943014 (-)
AMCG00018937 NA coding upstream 171775 26943064 ~ 27063981 (-)
AMCG00018940 NA coding upstream 445873 27217162 ~ 27224946 (-)
G119774 NA non-coding downstream 231347 26501001 ~ 26501920 (-)
G119770 NA non-coding downstream 272107 26460618 ~ 26461160 (-)
G119713 NA non-coding downstream 390189 26319977 ~ 26343078 (-)
G119691 NA non-coding downstream 582196 26119422 ~ 26151071 (-)
G119685 NA non-coding downstream 620114 26112864 ~ 26113153 (-)
G119825 NA non-coding upstream 39595 26810884 ~ 26812556 (-)
G119826 NA non-coding upstream 41825 26813114 ~ 26813426 (-)
G119891 NA non-coding upstream 451217 27222506 ~ 27278009 (-)
G119912 NA non-coding upstream 584536 27355825 ~ 27356032 (-)
G119929 NA non-coding upstream 694098 27465387 ~ 27468649 (-)
AMCG00018929 NA other downstream 247952 26451724 ~ 26485315 (-)
G119545 NA other downstream 1545859 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 1561623 25134771 ~ 25171644 (-)
AMCG00018898 NA other downstream 1648681 25075398 ~ 25084586 (-)
G119144 NA other downstream 3926929 22804345 ~ 22806338 (-)
AMCG00018930 NA other upstream 6346 26777635 ~ 26797720 (-)
G119827 NA other upstream 42191 26813480 ~ 26814073 (-)
G119893 LOC101154678 other upstream 459584 27230873 ~ 27242574 (-)

Expression


Co-expression Network