AMCG00018932


Basic Information

Item Value
gene id AMCG00018932
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26844770 ~ 26869193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018932
ttgagtccagattttaattttaaattgagtAACAGACTTCAAgataattgtttcatttttgccCCAGACTATAGTACCTACAGCCAGGCTGGAGCTCAGCAGGGGTATGGCTCCTATGCAGCTCAGCCAACTCAAGTATATGGACAGACTACACAGAGTTATGGCCAGCAAGGATATGGATCTTACAGCCAGCCTGCTGATTCTACCTACACTCAAGCTGGGTCATCTGCAGGGGCCTATGGTCAGGCAGCATATGGGACTTCCTATGGGCAGCCGCCTACTGCAGGTTACAGTGCAGCACCTGCAGTGCCGCAAGGTTACAGCCAGCCTGTTCAGGGATACGGTGCAGGTGGATATGATACCACTACAGCTGCTGCAACCACTACTACAACTCCAGCCaactatggcacacagccagcaTATGCAGCACAGCCGGCCTATCCTGGCTATGGCCAGCAGCCATCTTCCTCAGCCCCCTCAAGAGCACAGGAGGTCAGCAAGTCACAGGAGAATCCCCCGGGCCAGTCTAACCCAACCAGCTACACCCAAGGCAGCCTAGGCTACAGCCAGAATAATTACGGTTACCCCCAGGTGCATGGCTCTTACTCTCTCCAGTCAGGCAATGCCCAGACTTCCTATCCTTCAACCAGCTACAGTGCCAGCAACCAACCTGCCAGCTATGACCAGAATACCTACTCCCAGACTGGCAGTTACAGCCAGCAAGGTGGATATGGACAGCAAGGAAATTACAGTCAGCAAGGCTCCTATGGTCAACAGGGGAACTACCCTccaccacagcagcagcaacctccaccacagcagcagcagccaccaccaccaccaaccaACTACCCTCCCCCGTCGAACTCCTATGGACAGCCACCTCCTAATCAGTATGGTCAGCAGGCAGGAGGCAGCAGTTATGGACAGCAAAGTGATTATAATCCACCTAGTCAGTACAGTAATTATAGGCAGGATCACCCTAACAACATAAGTAGTGGCTTCTCCGGGTCAGAACCTGGCAGTTTCCCAGGTCCTGGTGAGAGTCGAGGTATGGGAGGGGCAGAGAGCCGGGCCCGTGGAAGAGGTGGCTTCGACAGGGGTGGCATAATCCGAGGAGGAGGTCGAGGGGGAATGGGCCGTGGAGGCATGGGCATCGCTGGAGACAGAGGTGGCTTCATTAAGCCTGGTGCTGTTCCTGAAGAAATAGATGACTCTGAAAACAGTACCATTTATGTTACTGggctttgtgaaaatATTAACAAGAGAACAGGGCAGCCTGCAGTTAACATTTACACAGATAAGGAAACTGGGAAACCAAAGGGTGATGCCACACTGTCCTATGAAGATCCCCCTGCTGCAAAAGCTGCAGTAGAATGGTTTgatgGCAAAGATTTCCAAGGGAAGAAACTGAAGGTATCCATGGCTCGGAGGAAGCCTCTGATGGGGCTGATGCGTGGGGGTATTCTCCCTCGAGATGGGAGGGGGCTGCTTGGACGTGGAGGTATGATGGGCCGAGGTGCAGGTGGCCGAGGTGGTGACAGAGGTGGCTTCATGCCTCGCGGGGGACCTCGCGGAGTTGGACGAGGAGGTCCTTCAGGTGGCAATATGCAGCAAAGAGCTGGAGACTGGCAGTGCCCCAACCCtggaTGTGGGAACCAGAACTTTGCATGGAGGATGGAATGTAATCAGTGCAAAGCTCCCAAACCTGAAGGATTTGTCCCACCCCCCTTTCCCCCACCAGGTAATGATTCCTTTCACATCATACAACTGAAGGTGGTGACCGAGGCAGAGGGGGCCTTGGTATGCGCGGTGGCAGGGGGATGGACCGTGGAGGGCCTGGGGGCTTTAGAGGCGGCCGAGGTGGAGATCGTGGGGGTGGATTTCGTGGGGGTCGTGGGATGGACAGAGGGGGATTTGGAGGAGGGCGGCGGGGAGGGCCCTCCATGGATCAGATGGGTGGCCGAGGTGGAAGGAGAGGCGTAGGACCCCCAGGCAAAATTGAGATGAAACCGGACCACCGCCAGGAGCGCCGTGATCGACCTTATTGAAGTACAGTCCATTTGCAGGAATTCCCATTTAatacaggatttatttttaaaacaaattttaaatttATAATTCCATATTTATAAGGCTATCATTATGGGATTTTTTTCCACAATTATTTCATTGCTACTGTTAATAGATTCCAAATTAAATAGCTtcggtttgtttatttttgttttgggttctgataaaatgtaagaaaacaagAACTGCCGAACGCATGCTTACTTGTGTACAGACAGCAGATTGTGGAAGGTGTATTGTGAAACCTTGTGACGAgctgtaaagttttttttttttttttttttttttttt

Function

GO:

id name namespace
GO:0021954 central nervous system neuron development biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018932 True 2364 mRNA 0.51 15 26844770 26869193

Neighbor

gene id symbol gene type direction distance location
AMCG00018933 gas2l1,LOC106580329 coding downstream 18813 26825262 ~ 26825957 (-)
AMCG00018931 ap1b1 coding downstream 73481 26733267 ~ 26771289 (-)
AMCG00018928 rasl10a,LOC106584972 coding downstream 219222 26623824 ~ 26625548 (-)
AMCG00018926 NA coding downstream 433985 26367350 ~ 26410785 (-)
AMCG00018925 slc35e4 coding downstream 488162 26344630 ~ 26356608 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding upstream 3701 26872894 ~ 26943014 (-)
AMCG00018937 NA coding upstream 73871 26943064 ~ 27063981 (-)
AMCG00018940 NA coding upstream 347969 27217162 ~ 27224946 (-)
AMCG00018947 LOC106585515 coding upstream 430397 27299590 ~ 27371370 (-)
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding upstream 512810 27382003 ~ 27396226 (-)
G119826 NA non-coding downstream 31344 26813114 ~ 26813426 (-)
G119825 NA non-coding downstream 32214 26810884 ~ 26812556 (-)
G119774 NA non-coding downstream 342850 26501001 ~ 26501920 (-)
G119770 NA non-coding downstream 383610 26460618 ~ 26461160 (-)
G119713 NA non-coding downstream 501692 26319977 ~ 26343078 (-)
G119891 NA non-coding upstream 353313 27222506 ~ 27278009 (-)
G119912 NA non-coding upstream 486632 27355825 ~ 27356032 (-)
G119929 NA non-coding upstream 596194 27465387 ~ 27468649 (-)
G119944 NA non-coding upstream 637315 27506508 ~ 27507199 (-)
G119945 NA non-coding upstream 649419 27518612 ~ 27519715 (-)
G119827 NA other downstream 30697 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 47050 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 359455 26451724 ~ 26485315 (-)
G119545 NA other downstream 1657362 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 1673126 25134771 ~ 25171644 (-)
G119893 LOC101154678 other upstream 361680 27230873 ~ 27242574 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002589 ewsr1a coding NC_007121.7 CM002894.2 7975585 ~ 7988417 (-)