AMCG00018938 (LOC107673410,LOC107730716,LOC107592308)


Basic Information

Item Value
gene id AMCG00018938
gene name LOC107673410,LOC107730716,LOC107592308
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 26872894 ~ 26943014 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018938
ATGCAGGAAATCAAGGAGACAGgcatgCCAGGATCCAGAGGGATGCCGGGCCCCAGTGGACCAAGTGGCGAGGTGGGGATGAGGGGTCCATCAGGTGTCCCAGGATCAAGGGGAGCATCTGGACCACCAGAACCCAGTGCCCTGGTGAAAGCCAGGGTCCTATGGCAAGGGGATCTGCAATCAGTCTACCACTCACTGCGTGACCACCAGGAACTCCCCGTGTCTAGTTGGTGCGAGGAGGGTGCATCCTCCTCCAGGGTAGGCGGGGCTGGTGTTAGGCCCCAGGGACCTCAAGGTCCACCAGGCCTCCCAGGTGAGAGAGGTTTCCATGGCCCCCCTGGTCCCCCTGGCCCCCCTGGACCTCTAGCCAGCACCAGAATACCAGACCTGGGTTACCCAAGGGACCATGGTGAAGCTGGTGACTCCCTTCTTTCCAACACCTTCCTAGACTCTCAAGGGGTCCCAGTGCGAGGCCCAGAAGGGCCACCTGGGCCACCAGGACCCGTAGGACCCCCTGGTCCCCAGGGCACAGTGGGGCCTCCTGGAACCCCAGGACAAAATGGCCAACCAGGGGCTCATGGTATCCAGGGGCCAGCTGGACCAAAAGGAGACAGAGGGGAGCAAGGATCCCTGGGGTATCCCGGAGAGAGGGGGTTCAAAGGAGAGCCGGGAGAGCCAGGGCTGAAAGGGGAGCAAGGAGAGAAAGGCCTGCCGGGGGACGGGATTCATCAAATCCGAGAGGCGCTGAAGATTTTAGCCGAGAGGGTTTTAATCCTTGAGACTATGATTGGTATCCATGTGTCTGGGCTCTGGGTGTCAGAACCAGACATCGGGTCAGGTGAGGGCTCATTTGGTACTCCATCTCCTGGGTTGTACCGGGATAAACGATCAGGAATCTCTGCCTACCGGGCGCTCTCATCACCATCGCCAGGGATGGACGAAGAGATCAGAGACAAGGCGACGAAGCAGACAGTGCCCCACCGACGTTCCTGCCACTGCCCGAACACCACCATGATGGCGGCGCTAGAGAGCAGAGAAGGCATCTCTCTGTGGCAGAAGGCATAG

Function

NR:

description
PREDICTED: EMI domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018938 True 1065 mRNA 0.60 13 26872894 26943014

Neighbor

gene id symbol gene type direction distance location
AMCG00018932 NA coding downstream 3701 26844770 ~ 26869193 (-)
AMCG00018933 gas2l1,LOC106580329 coding downstream 46937 26825262 ~ 26825957 (-)
AMCG00018931 ap1b1 coding downstream 101605 26733267 ~ 26771289 (-)
AMCG00018928 rasl10a,LOC106584972 coding downstream 247346 26623824 ~ 26625548 (-)
AMCG00018926 NA coding downstream 462109 26367350 ~ 26410785 (-)
AMCG00018937 NA coding upstream 50 26943064 ~ 27063981 (-)
AMCG00018940 NA coding upstream 274148 27217162 ~ 27224946 (-)
AMCG00018947 LOC106585515 coding upstream 356576 27299590 ~ 27371370 (-)
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding upstream 438989 27382003 ~ 27396226 (-)
AMCG00018946 NA coding upstream 610412 27553426 ~ 27567410 (-)
G119826 NA non-coding downstream 59468 26813114 ~ 26813426 (-)
G119825 NA non-coding downstream 60338 26810884 ~ 26812556 (-)
G119774 NA non-coding downstream 370974 26501001 ~ 26501920 (-)
G119770 NA non-coding downstream 411734 26460618 ~ 26461160 (-)
G119713 NA non-coding downstream 529816 26319977 ~ 26343078 (-)
G119891 NA non-coding upstream 279492 27222506 ~ 27278009 (-)
G119912 NA non-coding upstream 412811 27355825 ~ 27356032 (-)
G119929 NA non-coding upstream 522373 27465387 ~ 27468649 (-)
G119944 NA non-coding upstream 563494 27506508 ~ 27507199 (-)
G119945 NA non-coding upstream 575598 27518612 ~ 27519715 (-)
G119827 NA other downstream 58821 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 75174 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 387579 26451724 ~ 26485315 (-)
G119545 NA other downstream 1685486 25186207 ~ 25187408 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other downstream 1701250 25134771 ~ 25171644 (-)
G119893 LOC101154678 other upstream 287859 27230873 ~ 27242574 (-)

Expression


Co-expression Network