AMCG00018943 (dgcr6,LOC101064501,LOC108430318)


Basic Information

Item Value
gene id AMCG00018943
gene name dgcr6,LOC101064501,LOC108430318
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27475501 ~ 27482021 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018943
CAGGCATATTAACAGACTCCTTTTAGACAGGGGTCCTTCCGCGTGGCTGACGTCAAAATTTACCGAGATATTTCACACAACAGGACTGCTTAAGTGGAAGCAAAGCTTGCAACAAACATTAATAAGCAAACGTATCATAATATGtactaaaaacattaatttatctaTGTTTATTGCTGGGTTGGCTTTACAATTGCACTGAATTTAATCATATATCTTCTATATAAAACGGAGACCGTCTGAGGCACTTTCTACCCATACCATTGTCGGAACTAAAGTTAATATTTACAATACGATAAAGTTAGCAGGAAAGCCACTGCTACGGGCAAACCACAGTCCTGCAATTAAACTGTTTGCCGCATTTCCATTATCTTTCatacattgcttttatttagcaAAATGATGTCCCTCTTTTCTGGGACCCGTGGAGTTTATAACTCTGACTTGGTTCTGTAAAGTCGATGAGTTTAAATGAAGAGCTCTGTCTGAGTATGGAGAGCTACCCTGCTTTGTACGAAAACCAGTCTGACTCCACGAAACAACAGGAAAGACATTACTACCTGCTGTCTGAACTGCAGAACCTCGTTAAGGACTTACCCAGTTCATTCCAGCAGCGTCTTTCCTATACCACACTCAGTGACCTGGCACTCGCCCTGATAGATGGCACTGTGTTTGAGATAGTTCATGGGCTCTTGGAGATCCAGCACCTGACTGAGAGGAACTTGTACAACCAACGGCAGAAACTGCACAGTGAGCACAGAGGGCTCAAACAGGAGCTAGTCCGGAAGCATAAGGAGGCCCTTCAGTCCTGCAAATCGCATAATCTGGCTGTACTCAGAGGGAACCAGCAGGTGGAGATAGAGtCTTTGGAACAGCGTATAAAAGATGAGCAGAGAATGATGGATGAAAAAATTGTGGTGGAGATGGATCAGAAGGTGGTTGACCAGCAGACTACCCTGGAAAAGGCTGGTGTTCCTGGCTTCTACATCACCACTAACCCACAGGAGCTGACCTTACAGATGAACTTGCTTGAACTGATTCTCAAACTGCAACAGAAGGAGTCTCAGTCTGGAAGCCTGTTTTCTTAATAttctttggtttaaaaaaaaaattgcaatataAGTTTTGGAGTCTAAAGAGGACTGCCTGGGCTTACATGGACAATGACCTGTCTTTTCAGAATGGACATATTGCAAAGGGAGCTTGGAAGACTAAAGGGGAAGGCAATTAagacttttgctttttttactAAGTTGCAAACAAGTAAAACTGGTATTGAGGAAATGATTGGTTCAGAATCACTttgaacataattaaatatcCTAATTCTATGGAAAAATCAATTGGTCttcaaatttgaaaaagaaaggtGGTCTGGGAAAACATTGGTCCAGAAGTGCAGTGAAACCTACATTTCTTCTAGTTTGGCTTCCTAATTGGCAAAGATTATAATCCCTTTAGCATGATAGTCTATAGATATTGGAATTTGTAAAGTTCTTGGTAATTTTTTATTCTTAGTTTGATGTAATGAAAAGTAACTGGACTGGAATTGGAATGGTAACTCAAGCAACCTGCTGTCAATGGGTattgtttagattttaaattaatttaccaTGTCTATTAAAGGgtattttctaaatatgttGTTCTGAAATTATAACTGGCCATGATTTGactaaactgtttatttgtattacagaaATATGTAGAATTATTCTTGTAAATAGTTTGAAAGCAAAGTTTTGTTTACTTCCAAGATCCTGTGACAGCAAACTATAACAGTCAGCAGAATGTGATTTGAAGATTATTTTTGCATCTTTTTGACTCAATATGAAAAatgctatatatttatacaatatctTATCCTATCTTTATTTACAGAACAATTGTAGAAACACCTAAGCCTTATGTAACAGTCTCAACCTACATACTCCTATTTCCTTTGTAAGATCTTCCTGTCATGTGCTGCTCAATATAGATTTGCATGCTTCTGCCATGAGTTAAGTAATGGAAGGCAATAAGTCAGTTCATGTGACCCTAGGTTGACGACGACTTTGATCAATAGCTTGTATGCCTTTAACTCTGCTTGTTAATGGGATGTCTTGCATAAGTGTTGTAAtaactttttattgttattatttaagcatttgttaCCGTTTTCCAATGTACCCTGTATTACAATGGGATTCATATGAGGTTTTCTGTATtggcatgcaaaacaaaaaacatacaaaagcc

Function

symbol description
dgcr6 Orthologous to several human genes including DGCR6L (DiGeorge syndrome critical region gene 6 like).

NR:

description
protein DGCR6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018943 True 2238 mRNA 0.38 5 27475501 27482021

Neighbor

gene id symbol gene type direction distance location
AMCG00018941 dtx1 coding upstream 202238 27259930 ~ 27273263 (+)
AMCG00018942 NA coding upstream 272851 27201952 ~ 27202650 (+)
AMCG00018939 dtx1 coding upstream 400068 27073796 ~ 27075433 (+)
AMCG00018935 NA coding upstream 426299 27048846 ~ 27049202 (+)
AMCG00018936 NA coding upstream 426794 27047766 ~ 27048707 (+)
AMCG00018944 slc7a4 coding downstream 18339 27500360 ~ 27513931 (+)
AMCG00018945 sf3a1 coding downstream 86419 27568440 ~ 27580251 (+)
AMCG00018949 NA coding downstream 143816 27625837 ~ 27662982 (+)
AMCG00018950 LOC107092734,LOC103375490,LOC103470605,LOC106921081 coding downstream 259006 27741027 ~ 27742100 (+)
AMCG00018951 NA coding downstream 299606 27781627 ~ 27791861 (+)
G119897 NA non-coding upstream 193929 27281006 ~ 27281572 (+)
G119836 NA non-coding upstream 620059 26849626 ~ 26855442 (+)
G119834 NA non-coding upstream 626003 26844689 ~ 26849498 (+)
G119820 gas2l1,LOC106580329 non-coding upstream 648909 26825215 ~ 26826592 (+)
G119817 NA non-coding upstream 696841 26777653 ~ 26778660 (+)
G119941 NA non-coding downstream 32298 27514319 ~ 27515546 (+)
G119940 NA non-coding downstream 36243 27518264 ~ 27519750 (+)
G119963 NA non-coding downstream 188612 27670633 ~ 27670834 (+)
G120029 NA non-coding downstream 432821 27914842 ~ 27915123 (+)
G120039 NA non-coding downstream 467376 27949397 ~ 27951723 (+)
G119762 NA other upstream 1014274 26460620 ~ 26461227 (+)
AMCG00018922 med13l other upstream 1757075 25678677 ~ 25718426 (+)
AMCG00018913 NA other upstream 1990055 25466091 ~ 25485446 (+)
G119507 NA other upstream 2207720 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 5577801 21848370 ~ 21897700 (+)

Expression


Co-expression Network