AMCG00018944 (slc7a4)


Basic Information

Item Value
gene id AMCG00018944
gene name slc7a4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27500360 ~ 27513931 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018944
ATGGTTAGCCGGTTACGGAGCTGTACCCCAGCGGTGCGCTTCTGTCAGAAGCTGAATCGACTGAAAACTCTGGAGGACAACATGATGGAGACATCCTTAAAGAGGTGTCTGTCCACCGTGGACCTGGCCCTGCTGGGCATCGGGGGAATGGTTGGCTCTGGTCTGTACGTCCTGACGGGTACAGTGGCGAAAGATACTGCTGGGCCAGCGGTGGTCCTCTCTTTCCTCATTGCTGGCATTGCTTCCTTGATGGCGGCCTTGTGTTATGCAGAGTTTGGTGCCCGGGTGCCAAAGACTGGTTCTGCCTACATGTTCACTTACGTCTCGATGGGGGAGATCTGGGCCTTTCTGATTGGCTGGAATGTGGTTTTGGAGTACATGATTGGAGGAGCTGCTGTGGCTCGAGCTTGGAGTGGCTACCTGGACTCCATTTTCAACCACACCATAAAGAACTTCACTGAGACCCACATTGTGCATTGGGACATCCCTTTCATTGCCCATTACCCTGACCTCATGGCGGCGGGCATCCTCCTGGTTGCTACATGCTTCATCTCCTTCGGCGCCAGAGTGTCCTCCTGGCTCAACCATATCTTCTCAGCTGTCAGCTTGGCTGTAATCATTTTCATCCTCATCTTTGGCTTCATCTTGGCTGAACCTGCCAACTGGAGCAAAAAAGAAGGTGGCTTTGCCCCTTTTGGCATCTCCGGTGTGATGGCTGGTACTGCGACCTGCTTTTATGCCTTTGTTGGCTTTGATGTGATTGCTGCTTCCAGTGAAGAGGCCAAGAACCCACAGAAGTCCATCCCCATAGCAACAGCCATTTCCCTCGCTCTTGCAGCTACTGCCTACATCCTGGTCTCAACAGTCCTCACACTGATGGTGCCCTGGCATACTCTGGACCCTGAATCGGCACTGTCTGATGCATTCTTCCGCAGAGGATACAGCTGGGCGGGTTTCATTGTGGCCATCGGATCAATATGCGCCATGAACACAGTGCTCCTTAGTAACCTCTTCTCTCTCCCGCGCATCATCTATGCCATGGCGGAAGATGGCCTCTTCTTCCAGATCTTCTCCCGGATTAACCCTGTGACCAAGGTGCCAGTCATTGCCATCATGGTGTTCGGGACCCTCATGGCCCTGATGGCACTCATCTTTGACCTGGAAGCGCTGGTGCAGTTCCTGTCCATTGGCACCCTTCTGGCCTACACCTTCGTTGCGGCTAGTGTGATCGTGCTGAGGTTTCAGCCCGAGAAATCCAGCTCTACCACTTCCACCTCCACCACCAACTCGAACGTAGAGCCCTCCACAGTGGAGCCCCAGCCATCTACCCAGGACAGCGGCGAGCTAAAGGAATACGAATCCTTCTCTGACAAGCTGCAGCTGGTGGAGATGCAGAAGAAAGCCAAGGAGCGTCGGGAGCCCGGGCAGCTGAAGGCCAACTTTGAGCCTTACCTGAAGTTCCTGAGCAACTGTGAGCCCGGAGAGGTGGTGTCGTTCTCAGTCCTGGCTCTGATGGTCTGCACGATCtgcctgtgtgctgtgctgatcTTTGGGCACAACCACCTAGAGTTACCAGTCTGGAGCTTCTCTCTACTGGTCAGCTTCTTTGCCATGGGGTTCCTGATTAGCATGTCCTTAATCTGGGTCCATGAACAGCAACAGAAGACCAAGACATTCCAGGTCCCTCTAGTGCCCTTAATCCCAGCAATCAGCATCTTCCTCAATGTGTTCCTCATGTTAAAGCTCAGTCCCATGACCTGGATACGATTCTCCGTCTGGCTGGTAGCAGGGCTCTTGGTCTATTTTGGCTATGGGATCTGGCACAGCAAGGAGAATCAGCGGGTGCCCAAGACCTGTGACTTGAGCGCCCGCTATGTGGTGCTGCCCAGCGGGAGCCTGGTGGAAACAGTCCAAGCAGTGCAGCCTGACCCACAGGATGCCCCCCAGCCAGCGCCAACCGCGAAGCACAGCAACAGATGA

Function

symbol description
slc7a4 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4).

NR:

description
novel protein, partial

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13866 SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018944 True 1980 mRNA 0.54 4 27500360 27513931

Neighbor

gene id symbol gene type direction distance location
AMCG00018943 dgcr6,LOC101064501,LOC108430318 coding upstream 18339 27475501 ~ 27482021 (+)
AMCG00018941 dtx1 coding upstream 227097 27259930 ~ 27273263 (+)
AMCG00018942 NA coding upstream 297710 27201952 ~ 27202650 (+)
AMCG00018939 dtx1 coding upstream 424927 27073796 ~ 27075433 (+)
AMCG00018935 NA coding upstream 451158 27048846 ~ 27049202 (+)
AMCG00018945 sf3a1 coding downstream 54509 27568440 ~ 27580251 (+)
AMCG00018949 NA coding downstream 111906 27625837 ~ 27662982 (+)
AMCG00018950 LOC107092734,LOC103375490,LOC103470605,LOC106921081 coding downstream 227096 27741027 ~ 27742100 (+)
AMCG00018951 NA coding downstream 267696 27781627 ~ 27791861 (+)
AMCG00018957 NA coding downstream 710847 28224778 ~ 28235729 (+)
G119897 NA non-coding upstream 218788 27281006 ~ 27281572 (+)
G119836 NA non-coding upstream 644918 26849626 ~ 26855442 (+)
G119834 NA non-coding upstream 650862 26844689 ~ 26849498 (+)
G119820 gas2l1,LOC106580329 non-coding upstream 673768 26825215 ~ 26826592 (+)
G119817 NA non-coding upstream 721700 26777653 ~ 26778660 (+)
G119941 NA non-coding downstream 388 27514319 ~ 27515546 (+)
G119940 NA non-coding downstream 4333 27518264 ~ 27519750 (+)
G119963 NA non-coding downstream 156702 27670633 ~ 27670834 (+)
G120029 NA non-coding downstream 400911 27914842 ~ 27915123 (+)
G120039 NA non-coding downstream 435466 27949397 ~ 27951723 (+)
G119762 NA other upstream 1039133 26460620 ~ 26461227 (+)
AMCG00018922 med13l other upstream 1781934 25678677 ~ 25718426 (+)
AMCG00018913 NA other upstream 2014914 25466091 ~ 25485446 (+)
G119507 NA other upstream 2232579 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 5602660 21848370 ~ 21897700 (+)

Expression


Co-expression Network