AMCG00018947 (LOC106585515)


Basic Information

Item Value
gene id AMCG00018947
gene name LOC106585515
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27299590 ~ 27371370 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018947
ATGTCCCTTGTGAATTCAACCTTTTTGAAGATGACTGTGGAGGACACTACCCCCCTGACCATGCTGGAGGAGGTGACCACATTGGAAAGCCGTCAGGATGTTGCCATGACGCTAGTGAAGATCCACCTGGGTCAGGGGCTGGTAATCCCCTTCCTGGACTACCTGAACACTCGGGAGGTCAACCAGACCTGGGAGCTGGACCATTGGTGTCCCTCCAGTGTTCCAGAGAAGTTGACAGTGCCCAATGACAGCGACCTCAGGTCGACCAAGATGGAAGACGATGCCACCGATGTGGGACACCTTGCTTGGCAGTGCTTGGTACCAGATGAACCAATGCCAAGTGACCCAGGCCTCTCCACCAGGGGCTTCAGGAAAATTAAGGTGACAGGTGGGCATCACCCTGTGGCACCCCCGCCCACTTGCAGGATAAAAGTCGGGTCCACTGAGGTTCAGGGTCTTCTGGATTCAAGTAGTGCTGTCACAGTAGTACACCCTTCACTGGTGCGGACCTCCCAAATACAAAATCGTCCAATGATGACCCTGGCCTGTATCCACGGAGATCGGCAATCTCCAACAGCCTTAAGATGCAAGATGCTGGCTGCCCATGTGTTCCATAGTCAGGCAAGCCAGCCCTCTGCTGAGGACCCTGCCAACCCCTCCGAGGATGGAAAGCACAGCAATGATGAAGCGGATCCTAACACACTTTTCCGGTCCAATTCCCTGGCATCCAAGGCCATGGAGCAGTTTATGAAGgCTGTGGGAATGCTCTACCTGCATGAGGTCTTGAAGCCTATTGTGAACCACATCTTTGAAGAGAAGAAATACATTGAACTGGACCCATGCAAAATAGAACTGAATCGATCCAGACGTATCTCCTTCAAGGGCTCAGTGTCTGAAGCCGAGGTGAGGGAGAGCAGCTTGGAACTTCTGCAGGCATACCTCTCTGACATCATGGAGTCCATTGTGGGCTCGGTGGCCCAATGTCCCCCTGTCATGAGAGTGGCCTTCAAACAGCTGCACAAGAGGGTGGAGGAGCAGTTCCCAGAGCCGGAGAATGAGCCAGAGAGGGAAATGCCACTGACGTCCTCTGGGCTGGAAGAGGATGAGCCACTGATGTCCTCTGGGCCAAAAGAAGAGGAGCCTCTGATGTCCTTGGAGGCCGAGAAGGAGGAGCTGCTGCCATCCTTGGAGCCAGAGGAGAAGGAGCCAGTGACATCCTGGGGGATATTTGGCTGTGGCATGGCCATCCTCCAGCACCCTGGGGATGTGAAGTATCTTGCCATCAGTGGGTTCTTCTTCCTGCGTTTCTTCGCTCCTGCCATCTTGACTCCCAAACTCTTCAACCTTAGGGACCACCACGCAGACACACGCACCAGCCGCACTCTTTTGCTTCTGGCCAAGGCAGTGCAGAGTGTGGGCAACCTGGGCCTGCAGTTGGGCCATGGGAAGGAGCAGTGGATGGCCCCCCTGCACCCCTTCATCCTGCAATTGTCAGAGGTGCACCAGCGTGCCGTGTTCCTGCCCTCCGTGACAGTGAAGGAGGGCTACCTTTACAAGCGCAAGGTGGAGGGGCCCCAGCTGCTGACCCGCTTCGCCCTCAAGAAACGCTACTTCTGGCTGAGCAGTGAGACCCTTTCCTACGCCAAGACTCCTGACTGGCAGGTCCGCTCCTCCATCCCTGTGCAGCGTATCTGTGCTGTGGAGCGTGTGGATGAAAATGCCTTTCAGCAACAGAACATGATGCAGGTCATCACTCAGGACAATGATGGACAACTCCATACTATGTACATCCAGTGTAAGAACGTCAATGAGCTGAACCAGTGGCTGTCAGCCATCAGAAAGGCAATCCTAGGTTGTAGTCGAACCCACTCTGCTGTGACACTAGGTGACTGGAGTGACCCGCTGGACCCTGATGCAGAGACACAGACCATCTATAAACAGCTGTTGCAGGGCAGAGACAAGCTCAGGAAGAAGTACCTGGAATCTGTGGATGCTGAAACAGCCATTGATGAGGAGCAACGCAAACACAGCCCCCACACACCTCCAGatggtGTTGAGCGCAGTCGTATTTCCCTGGAGCGGCGGATGGCAGCGGCAGCACGACTGCTGGACGTGGTGCAGGACCTGGAGCGTGCTCACCAGGCCTTCGAGCGGCGTGAGAAGGAGGAGGCGGCCAATGAGATCCTTCCTCCCTAA

Function

NR:

description
PREDICTED: rasGAP-activating-like protein 1 isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0043085 positive regulation of catalytic activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018947 True 2196 mRNA 0.55 16 27299590 27371370

Neighbor

gene id symbol gene type direction distance location
AMCG00018940 NA coding downstream 74644 27217162 ~ 27224946 (-)
AMCG00018937 NA coding downstream 235609 26943064 ~ 27063981 (-)
AMCG00018938 LOC107673410,LOC107730716,LOC107592308 coding downstream 356576 26872894 ~ 26943014 (-)
AMCG00018932 NA coding downstream 430397 26844770 ~ 26869193 (-)
AMCG00018933 gas2l1,LOC106580329 coding downstream 473633 26825262 ~ 26825957 (-)
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding upstream 10633 27382003 ~ 27396226 (-)
AMCG00018946 NA coding upstream 182056 27553426 ~ 27567410 (-)
AMCG00018953 NA coding upstream 436772 27808142 ~ 27841558 (-)
AMCG00018952 NA coding upstream 491415 27862785 ~ 27878157 (-)
AMCG00018955 NA coding upstream 578342 27949712 ~ 27963857 (-)
G119891 NA non-coding downstream 21581 27222506 ~ 27278009 (-)
G119826 NA non-coding downstream 486164 26813114 ~ 26813426 (-)
G119825 NA non-coding downstream 487034 26810884 ~ 26812556 (-)
G119774 NA non-coding downstream 797670 26501001 ~ 26501920 (-)
G119770 NA non-coding downstream 838430 26460618 ~ 26461160 (-)
G119929 NA non-coding upstream 94017 27465387 ~ 27468649 (-)
G119944 NA non-coding upstream 135138 27506508 ~ 27507199 (-)
G119945 NA non-coding upstream 147242 27518612 ~ 27519715 (-)
G119956 sf3a1 non-coding upstream 199884 27571254 ~ 27572829 (-)
G119981 NA non-coding upstream 302476 27673846 ~ 27674566 (-)
G119893 LOC101154678 other downstream 57016 27230873 ~ 27242574 (-)
G119827 NA other downstream 485517 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 501870 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 814275 26451724 ~ 26485315 (-)
G119545 NA other downstream 2112182 25186207 ~ 25187408 (-)

Expression


Co-expression Network