AMCG00018954


Basic Information

Item Value
gene id AMCG00018954
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27974992 ~ 27984938 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018954
ATGAAGCAGCTGAGTGCACTGGGTGCCAGGAGACATGCGTTTTTCAGGAGTCCTAGGCGAATGAGGCCGCTTGGCGCCAGATTGGAAGACTCTGAAATAATGGCCTCCGGGCCTTATAATTACTATGGAGATTATCAAGGGGACTACTACGGCCCCAGTGGTAACTACGACTTCTTCCCTCATggccccccctcctcccaggCCCAGTCCCCAGCCGAGCCCTACCTTCCCGGCTCAGGCCAAGGGCCACTGGAAGGGCCTCTCTCAGGCCACCACCCCTCGGACAACCAAAGGTACACGGACATGATCTCCCACGCCGACACGCCCAGCCCCGAGCCGGGCCTCACCGGGCCCCTGCATCCCATCCCAGGGGAGGTGTTCAGTGGGGGGCCCAGCCCACCCTTCTCTCTGGCCAGTAACTCCAGCTACAGCGCTCCCCTTTCCCACCCCAGCCAGGAGATGGGCGAAACGGCTGTGTGGTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001654 eye development biological_process
GO:0030900 forebrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018954 True 483 mRNA 0.62 2 27974992 27984938

Neighbor

gene id symbol gene type direction distance location
AMCG00018955 NA coding downstream 11135 27949712 ~ 27963857 (-)
AMCG00018952 NA coding downstream 96835 27862785 ~ 27878157 (-)
AMCG00018953 NA coding downstream 133434 27808142 ~ 27841558 (-)
AMCG00018946 NA coding downstream 407582 27553426 ~ 27567410 (-)
AMCG00018948 rasal1,LOC106579924,LOC106585515 coding downstream 578766 27382003 ~ 27396226 (-)
AMCG00018956 lhx5 coding upstream 13217 27998155 ~ 28007014 (-)
AMCG00018961 rbm19 coding upstream 154618 28139556 ~ 28154700 (-)
AMCG00018959 NA coding upstream 191881 28176819 ~ 28189538 (-)
AMCG00018962 NA coding upstream 206780 28191718 ~ 28203341 (-)
AMCG00018960 LOC106563140 coding upstream 218768 28203706 ~ 28222051 (-)
G120031 NA non-coding downstream 41819 27931667 ~ 27933173 (-)
G120026 NA non-coding downstream 75436 27899322 ~ 27899556 (-)
G119995 NA non-coding downstream 205193 27769555 ~ 27769799 (-)
G119988 LOC107092734,LOC103375490,LOC103470605,LOC103146723,LOC101486660 non-coding downstream 231957 27740932 ~ 27743035 (-)
G119986 NA non-coding downstream 241619 27733063 ~ 27733373 (-)
G120145 NA non-coding upstream 369162 28354100 ~ 28354838 (-)
G120160 NA non-coding upstream 420075 28405013 ~ 28405304 (-)
G119893 LOC101154678 other downstream 732418 27230873 ~ 27242574 (-)
G119827 NA other downstream 1160919 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 1177272 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 1489677 26451724 ~ 26485315 (-)
G119545 NA other downstream 2787584 25186207 ~ 25187408 (-)

Expression


Co-expression Network