AMCG00018956 (lhx5)


Basic Information

Item Value
gene id AMCG00018956
gene name lhx5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 27998155 ~ 28007014 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018956
GGTCCGGTGGCCACGGTCCGGACAGAGGTGACCACTCCGGCAGGTTGGCACTGGTTCGCCTCCAGGACAGCGGGAGGATGGTGCACTGTGCTGGCTGCGAGCGGCCCATTCTGGACCGCTTCTTACTGAATGTGCTGGACCGAGCCTGGCACGTCAAGTGCGTCCAGTGCTGCGAATGCAAGTGCAATTTGACTGAGAAATGTTTTTCCAGGGATGGCAAGCTTTATTGCAAAAATGACTTTTTCAGACGGTTCGGTACGAAATGCGCCGGATGCCTTCAAGGTATCTCCCCCAGCGACCTGGTGAGAAAAGCACGGAGCAAGGTGTTCCATTTAAACTGCTTTACCTGCATGGTCTGCAACAAACAGCTGTCCACCGGGGAGGAACTGTATATAATTGACGAAAACAAGTTTGTCTGTAAAGAAGATTACTTGAACACTAGCGCCATTAAGGAAGTCAGTTTAAATTCAGTGTCATCGTGTACAGATCGAAGTTTATCTCCAGACCTCCAAGACCCGATACAGGACGACACAAAAGAAACGGACAATTCCACCTCCTCGGATAAGGAGACGAACAATAACGAGAATGAGGAGCAGAACTCGGGCGCAAAGAGGAGAGGCCCGCGGACCACTATCAAAGCCAAGCAGCTGGAAACGCTCAAGGCGGCCTTCGCTGCCACGCCCAAACCCACCCGGCACATCCGGGAGCAACTGGCACAGGAGACGGGCCTCAACATGCGAGTCATC

Function

symbol description
lhx5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within eye development and forebrain development. Predicted to be active in nucleus. Is expressed in several structures, including CiA; cranial neural crest; forebrain; neural keel; and presumptive ectoderm. Orthologous to human LHX5 (LIM homeobox 5).

NR:

description
PREDICTED: LIM/homeobox protein Lhx5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001654 eye development biological_process
GO:0030900 forebrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018956 True 746 mRNA 0.53 3 27998155 28007014

Neighbor

gene id symbol gene type direction distance location
AMCG00018954 NA coding downstream 13217 27974992 ~ 27984938 (-)
AMCG00018955 NA coding downstream 34298 27949712 ~ 27963857 (-)
AMCG00018952 NA coding downstream 119998 27862785 ~ 27878157 (-)
AMCG00018953 NA coding downstream 156597 27808142 ~ 27841558 (-)
AMCG00018946 NA coding downstream 430745 27553426 ~ 27567410 (-)
AMCG00018961 rbm19 coding upstream 132542 28139556 ~ 28154700 (-)
AMCG00018959 NA coding upstream 169805 28176819 ~ 28189538 (-)
AMCG00018962 NA coding upstream 184704 28191718 ~ 28203341 (-)
AMCG00018960 LOC106563140 coding upstream 196692 28203706 ~ 28222051 (-)
AMCG00018958 LOC107580981 coding upstream 238454 28245468 ~ 28263767 (-)
G120031 NA non-coding downstream 64982 27931667 ~ 27933173 (-)
G120026 NA non-coding downstream 98599 27899322 ~ 27899556 (-)
G119995 NA non-coding downstream 228356 27769555 ~ 27769799 (-)
G119988 LOC107092734,LOC103375490,LOC103470605,LOC103146723,LOC101486660 non-coding downstream 255120 27740932 ~ 27743035 (-)
G119986 NA non-coding downstream 264782 27733063 ~ 27733373 (-)
G120145 NA non-coding upstream 347086 28354100 ~ 28354838 (-)
G120160 NA non-coding upstream 397999 28405013 ~ 28405304 (-)
G119893 LOC101154678 other downstream 755581 27230873 ~ 27242574 (-)
G119827 NA other downstream 1184082 26813480 ~ 26814073 (-)
AMCG00018930 NA other downstream 1200435 26777635 ~ 26797720 (-)
AMCG00018929 NA other downstream 1512840 26451724 ~ 26485315 (-)
G119545 NA other downstream 2810747 25186207 ~ 25187408 (-)

Expression


Co-expression Network