G114030


Basic Information

Item Value
gene id G114030
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 468917 ~ 472124 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142769
ATCCAGTCAacataaagtacatttaatgtatttatacagctcatatatacaaaacaacTGCAAGACAGTTCATCAGTTTCagatttaaacactttttacaGTCAAGGAATACCTTTCTTACAATCACAGCGGGGCAGAGGGTGGGGGTGCTGTCAGTTCCTGGATGcggtacagtgtgtgtgtgtgtgtgggggggtgataACACGAGAGGGACCGGCAGCTCAATCTGAGGCATCGCTGCGTCGTCTCCAGGCAGTTTATGACCCCTAAAGAAACAAACGGCAACAATAACAACGAAATCCCAACGCACTCAGTGCCAGGCTGGCCGAGCTCGGGGGGGCGCAGCAACAGTGAACGTCAGACATTCGTAGTGAGCAGCagctttctgtctctctctctatacccACCCAACATCTCACCCAGAtgacaaactaaacaaatacaatgacaaCTTCCCCCCCAGCCATTCACAGACCTTCTCAGCATgatttgtgtctttatttttagtctttttgtttgcttgtttgtttggctGCTGATTGAAACCTCGGTGAGGATATTTCAGTGCAGTTGGAGccgtgcgagtgtgtgtgtgtgggagcagAGCTGAAATTTAcaagttcacacacacacactgcaggagaAACCGACCCCCCCGCCGAGCCGTGGCAGGGAGTGTCAGCGCGTGTTCGGTGCTGGTTTGGCTCAGCCGGCCCCCCTGGCTTTCCCTGTGCTGTCGGTTATTACACATTGTGACTGAAtctcaacaacaacacaaccccTCTCGGCCAACATTCCTGTTATTTTTCCCTAATTGCCATAAACCTCAGGCCtgactcctcctcctcctcctcctcctcgcacTCCGCACAGCtgctgcccctctctctctcgctctctctcgctctctctcgctctctccctccctccacagcCCCGGCACGATGGGAAAAGCCCGCTCTGGGTCCGCGAGTCTCACGCCCCGCTCCCCACATGACGAGGCTCTCTCTCCCCGCAGTCAGGCTGAGATTGAAGCTGCAGATAAACACCAGAAAGTAAATTCACAGGCACCGGCCTCTGTGTGCGGCCCGTCCGCTAGTCCAGATGGAATCCATTTCAGACGGGATCTTTCAGAGGGAAATGTATTAACTTTGAAAGACTGCACTGAGGGACAGAGGGCCTTGAGATGACAGAACCAGACCGGGGgggcagaaaaaataaaagccaagGGAAACCGGCACGAACTAAACTCATCCACAATTGTGCACTCAGGCACATGCAGAGAGGGGGACCATTATGGTTTTCTGTCCCCCCGGTGTGGTTAGAGCAGTGTCCACAGAGGAAGTGGGGCCCCTGTCGACCCCTCGGCCCTCAGCATTGTCCTGCCGTCCTCTGGGAAGATGGTGTCTCCCTTGCCCTGTCCCTTCCTCCCTCCACTAGAGCGATACCCCATCACCACAACATACAATAACCAGAAAAACTGGGCTGAACTCCAACACCACTGGAATTACCTGTCCAGAGAaacctgcccccccaccccaacaagGACGATCATAAAAATAGTGCAGAACAGTCACACTCGGAGAGAGGGCCCCACAGGCAGGAGATAGTGGACTCGGCCAGAGCTATTTTGAGAGCCGGTATCTTTTCTCCTTCGCCAGACTGACGGGGACATTCAGACACAGATTAGAGCAAGGGGGGCGGTAGGGCCGAACGCAGGGCAGGCTGGTCACGTTCGCTCTCATCACACTGACGAACAGACGGAGGCAAAACTACTGTTCGGCAGCTGCCATCAGTGGAGCTCAATCGAGCCGCTCTGACACACCGTCCGTCACCAGGATCTGTCTCAACTCTCGACCAATAAATATAACCGTAgtgacattattattaacaatactgGTCATATAGTAAGAGCAGACTTGgtcaatataatgcaatatgggcaaacaaccaaacaaatcaaataaaaatcccAACAGAATATCTAAACATCTGGGCCACCTCTGCATCCCTCACACAgacaggttttctttttcagttttgtttggtAATAATACTAAAGTAGCAGTACAAATATGCTGGGTCGGGGTTACAACAATATCCAGTAAGGAAGACAATCAGAAAAGATAcggcatacatttatttacaatatacatatacttttctccatttagtTAGAAAATAGTTTACcgtttgttgattttattttatttactaatttgaagaaataagttttttttgctaaataagtgtttttcaGATAAGTTTTCTTCATAACAAAaggactcacacacacagtccagagctcggcacacacacacacactatatacacaggcacacacaatCAGGATCTCTTGTTCTCTCCAGATTACGTTTTAGGATTTTCAAGATTGATACAGTGGAAGAAGGTCACTGGTCATGGAAACTCATGGAGAGGGGAACATGTGCAAACACGATGCCTCTCATTATCTCCTCTTACAGGAGTCGGCCCATGGCCCCATCCCACTGCAGGAGGAGCTACAGGTCTGTGTGAATTATTGGGGACGGGCGGCACAAGACCTGGTTACTTCACAGCTGCCGATTAAACAGATGATCACCTTTACGATCTCCTCTcagggacagagggagacacTGGagccacaaagcaaaacaaaacaaattctcaTCTACACTGCCCCTGTGCCCCTagttttttattcctttttagtttttttcttctttcgtTCCCTCTATCTGAATCAAAATGCTATGAGAAAACCATATGAATTAAAGAATAACAGTGTTTAGCCACATAGTTTTCCACTGAGGGGGCCAGTGGAGGGTAGTTCGTCAAATCCATTTAATCTCTCCTCTTGCTAAACATACCCGTGACTAAGACTGATCATTACAACATCCGTCCTGGGCTCTGGTCGGACCCTCAGTGCTGGGGCGGCCCACCGCGCATTCGCTTTAAGGCACTGGGTTGcgaaagatttaaaaaaaaaaaaacaacaacaaacggCAGCGTATCGCTCTATGTGTTCAGCAGAGTCCGTGACCCTCACAGGCATCTGTGAAACACACTATAAATTAAACTCCTTCAGCTCAGAAGGTTTCTTTTTCTAGTTTTTGGCCGACAGTGCACATGACTAGGCTACCAAGAGCGAGTGCTGGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142769 True 3158 lncRNA 0.48 2 468917 472124

Neighbor

gene id symbol gene type direction distance location
AMCG00018042 sdk1a,sdk1,LOC105890716 coding downstream 269682 195021 ~ 199235 (-)
AMCG00018039 NA coding downstream 340543 45315 ~ 128374 (-)
AMCG00018041 NA coding downstream 425830 37682 ~ 43087 (-)
AMCG00018040 NA coding downstream 446562 9689 ~ 22355 (-)
AMCG00018048 NA coding upstream 972 473096 ~ 481320 (-)
AMCG00018047 NA coding upstream 11913 484037 ~ 489046 (-)
AMCG00018054 NA coding upstream 64554 536678 ~ 537994 (-)
AMCG00018056 grifin,LOC107758328,LOC107592780 coding upstream 74662 546786 ~ 551240 (-)
AMCG00018055 NA coding upstream 86398 558522 ~ 565582 (-)
G114044 NA non-coding upstream 26203 498327 ~ 499518 (-)
G114166 ppl non-coding upstream 407187 879311 ~ 889088 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding upstream 430196 902320 ~ 903843 (-)
G114183 NA non-coding upstream 441107 913231 ~ 913641 (-)
G114213 NA non-coding upstream 690766 1162890 ~ 1166493 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 26493 441085 ~ 442424 (-)
AMCG00018074 NA other upstream 305263 777387 ~ 800471 (-)
AMCG00018077 NA other upstream 450154 922278 ~ 926739 (-)
AMCG00018113 NA other upstream 1513025 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 1534782 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1809576 2281700 ~ 2288862 (-)

Expression


Co-expression Network