G114123


Basic Information

Item Value
gene id G114123
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 777383 ~ 794790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU142895
CCAGTATGTTTTGTAGTACTTTATTGTAGTAACATCTCTTTGTACAACTCAATTAATGGTTAAATAGGTTTTAAATATGATCTGAAGTTTCATAAAATAGTAGATTCTAATGCGGATTTATTCTTCACAGCTCTGACTGCAGTTACAGTGTCTTAAAAAGTGAACAAGCTATTCATTCAATATTATACTCtattaaatagaaaatagttttaaattctCTGACTcgcatatcattattattaagtattatttaaaaaaatagcgATTAAATGCTGACTAGTTCCCAGCAGCTTTAACTGCCCTGCTCTCAGCCCAGCCCTGCTTTGTGCATCAAGAGCGTCCGATTACAACGCCCTGCTGTCGCTCTTCAAATTCGCGTCAAGATTCAAGAGTGAAAAGGTCTTTAAAACTCAAAAACCTCTTCGCCAAAACTgtgcttttgtttggttttcgtTCGGTGTTGCCACACCGCCCCCCCGCACCCTGGTAGTTATCGGATTCGAGTCGCGTCTGATGAGCAGTCGGTGTGTCTAAGCTACGGTAAATCGCTGGTGGTTAAGGCAGACATGGAGGCGTGGGTGGGGGGGCTATGATTAGTGCATTCTCTGTGCTCCACAATATTGCTGATTATAGAAGAAGCCCTTTGATAATCGATCGGTCTGCCCGTGTCGCAGGCACGGCATCGCCTGCCTCGGCTCTCGTCTAATATggctttcaaatacattgtgattattattattataagtactATTTTTTGACTACTGTATGAAAAGGACAGTTTAAACCCTGTGCTTCGTGGGGGTTATTTACACAGACCGATGGCAGGGGTGGAAGATGCTCGGGCTCCAGGGTGGAGAAGCGCAGAGCGACGGGTCTGGAAGTTTCGTCGGGTGTCGGTTTGTCCCGTACGGcgcccctctctccctcgctgTCGCCACACAGCGGCCCGTGACACAGCGGTACCTCCTGGATACCTCAAGCACTCAGCCCTGCCCCGGGGTCTGCGGACTGACCCTCCACAGAGCATTAAGATCTTCCCTCCGAGGTCAGAAACcgcagacacaaacagacattttatatttttacacactGAAAAAAAGCATCTTGAAAGCAGTGGATCAAtccctggactgtccctgtaaAGTGACGACAGACTCGCATGTCCTCTTGGTTTGTCTAGCccttctttgtgtttttattgtactgATGCGTATCGATATGGCTCGTGTAGCGTCGCTCCTCCGGGGGCGGCGGCCCTATCTGGAGATCAGGGAGCTGCTCTGGGACTGGCTGGAGGAGCGACGCTGCACTTTTCCACGGGAGCAAGACGCAGCACCTGCTCCAGCGAATATCGTGCCGCACATGTTCTCAGTACATGGCAGTTACAaattcatttcttttttgaGGGGTAGAGGGACTGTT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU142895 True 1422 TUCP 0.47 2 777383 794790

Neighbor

gene id symbol gene type direction distance location
AMCG00018069 NA coding upstream 93 763554 ~ 777290 (+)
AMCG00018071 NA coding upstream 16682 760423 ~ 760701 (+)
AMCG00018070 NA coding upstream 17664 746675 ~ 759719 (+)
AMCG00018068 axin1,LOC107564695 coding upstream 38100 737140 ~ 739283 (+)
AMCG00018058 NA coding upstream 105547 667954 ~ 671836 (+)
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding downstream 107394 902184 ~ 912776 (+)
AMCG00018076 rogdi,LOC105899978,LOC107719995,LOC105899878 coding downstream 124300 919090 ~ 921114 (+)
AMCG00018081 uncx,LOC106601117,LOC106607339 coding downstream 241560 1036350 ~ 1041531 (+)
AMCG00018084 mafk coding downstream 467239 1262029 ~ 1265534 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 714204 1508994 ~ 1511372 (+)
G114056 NA non-coding upstream 223879 553210 ~ 553504 (+)
G114018 NA non-coding upstream 305259 468788 ~ 472124 (+)
G114205 NA non-coding downstream 368102 1162892 ~ 1178095 (+)
G114237 NA non-coding downstream 472050 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 495765 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 738685 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 1069767 1864557 ~ 1865570 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 197679 575260 ~ 579704 (+)
AMCG00018072 LOC107720077 other downstream 76531 871321 ~ 889033 (+)
G114219 NA other downstream 424989 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 1153051 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 1178048 1972838 ~ 1973924 (+)
G114330 NA other downstream 1182214 1977004 ~ 1978727 (+)

Expression


Co-expression Network