G114205


Basic Information

Item Value
gene id G114205
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1162892 ~ 1178095 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143011
ATTCACGGCACCAGAAACACATCAGTAAATATTAGAGGTTTATTGGACAGCAAACAAAATTGAAACcataaaaacagacatacaaatattacacaaaCGCACATTTCAAACCAGTCTGAATCTCCTTCCCAGTTCTGAAGTTCTAAAAGGTTAAGACTACAATCATAtccatggggaaaaaaaaaagacataaaaccttttattaaaacaatttaaaaagttgtgAAAAGGCAAACACGTTTTCCACCACAGACACCTTCAAGTCGAAGTGCAAAATGATACAACGGTCAATCTTGCACAGGAGAGGTTTGACTCCATATGCAGGGAATTTATATTTTGGGGATTTTGCGATGGTAAAAGATTATGAAAACAGGCCCAGGTTTGCACAGATTTCCCCCTGAAGTCTCGATGTGAACACAGACGGTTTTAACCGTTTTAAGAGCACAATTATACACTGGGGTCGAATTTACAACAACTACAGGGACCGGAGGTGGACGATCAATTCTGACAAGTCTTTTACAATTAGCCCCATACTGCCACCTTCTGATGGAAAACCACTTCAAGCCCCATCCATTATTTCCCAGTTAAACAAATTGAACATGTTTAGTTGTCAATCCAAAGATAGGAGAACCCTAAACGGGCACAACGTACACCCAGACATTTCCGTTCTCCAAGGGCTTCTATAAAAGTTtgccattaaaatataatttttgtatCAGATCCTCTTTAGAACTGCGACAGGGTTCTGTTGCTTACGGGAGCATTTTACTAAAAATCCAATATGGATCAAACTACGATAATTTTGTTAATATCTTTCTTCAACAGAAATTCAGGGCCATTTATTCCGATTTGGTTGCcgattttagaaaaataaaaacacgttAAATCATCTGTAAGTCATGTTATAGTTTTATACTTGTTTCACCCCCATACTTGAGCTGGGAACAAACTCTTGAAAATTATTGCTTTTCTTGTacaagtttaatttttttttttgcaaaaacCTGAACAGGAACAAGTGAATTCGTCATAGTGCCAGTGGGCCGCTACCCAGACGGGACAATTAATTTCAGTATTGCGGATCTTCTCCTCTTTAACGAGCCGCGTTCGTTAATGCAAGACCACGCAAACCTCCGTGCCGCTGATATGTGCAAACACGAAAGCACCGGCGCcattaataatatttcagaGATGCGCAGGTGTGCATTTAAAGCTGAATTAGACCCACTGGCAACAATTCATTTGGAAGATAAATTAGaacattaaaacagtaaatCGACATTCAAAAATGTGACGCTTAAACCGAGAGAAACGTGAACAGTTTCAGATCTCTCCGAGTGAGACCACATTTACTTGTCTAACTACAGAACGATAAAATGCGGAGAAGATTCGTTTTGGGGGGGATGTTACTTCCAATCGTCCTGAGAACCAAGCAATGAAGAACTAAGAATGAACAATTACCACACATGATCTCAATGGACAGATAATTAACGGAGTGTATGCAAGACCAGTTTCTCACAATTACAGAATATAAATccataaacatgtattaaaccGTGACACTGggttcagattttgttttgcatgactGGAGACCTGAACCAGACCTTCACAAAACCCTGAGGACCTCCAGACGTCGGCAACCGTTTCCTCTGACGGAGAGGGTGGGATTGTTGTCCTCAGTTTCATCCTGACTGGATGAGATTACAACACAAGACTGCATATCCCGGTGACCGAGAAGGAACAGAAGTGAATCGCAAGCTGAACGGGCCCGACCTTCGCCCTCTGTCCGAGTCCGTCCCACCAGCATGGGCAGTGCTACTACTCACCCCAAAAggtaacatttcaaaatgaaaacatttctctTGACCAGACACATATGCAGGCTTGGATAAATCATAACCAGACGGACAGGACAGAAGTGTGTGGTGTAAGAATAGAGCTCCCCCGAGACCCAGTCcttgttttgctttagtttttccACTTAAACAGTTTGGAAATGGGAgattttctcttCACCAGACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143011 True 2027 lncRNA 0.41 2 1162892 1178095

Neighbor

gene id symbol gene type direction distance location
AMCG00018081 uncx,LOC106601117,LOC106607339 coding upstream 121361 1036350 ~ 1041531 (+)
AMCG00018076 rogdi,LOC105899978,LOC107719995,LOC105899878 coding upstream 241778 919090 ~ 921114 (+)
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 250116 902184 ~ 912776 (+)
AMCG00018069 NA coding upstream 385602 763554 ~ 777290 (+)
AMCG00018071 NA coding upstream 402191 760423 ~ 760701 (+)
AMCG00018084 mafk coding downstream 83934 1262029 ~ 1265534 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 330899 1508994 ~ 1511372 (+)
AMCG00018097 nudt1,8odp coding downstream 571134 1749229 ~ 1752065 (+)
AMCG00018096 NA coding downstream 592061 1770156 ~ 1779659 (+)
AMCG00018104 NA coding downstream 618307 1796402 ~ 1802228 (+)
G114056 NA non-coding upstream 609388 553210 ~ 553504 (+)
G114018 NA non-coding upstream 690768 468788 ~ 472124 (+)
G114237 NA non-coding downstream 88745 1266840 ~ 1268893 (+)
G114253 NA non-coding downstream 112460 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 355380 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 686462 1864557 ~ 1865570 (+)
G114321 NA non-coding downstream 772166 1950261 ~ 1950500 (+)
AMCG00018072 LOC107720077 other upstream 273859 871321 ~ 889033 (+)
G114123 NA other upstream 368102 777383 ~ 794790 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 583188 575260 ~ 579704 (+)
G114219 NA other downstream 41684 1219779 ~ 1220216 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 769746 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 794743 1972838 ~ 1973924 (+)
G114330 NA other downstream 798909 1977004 ~ 1978727 (+)
AMCG00018106 NA other downstream 800951 1979046 ~ 1982566 (+)

Expression


Co-expression Network