G114213


Basic Information

Item Value
gene id G114213
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1162890 ~ 1166493 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143020
AAACCGTATTATTAATAGCGGTAACAAGTGTATAACTTTTTATATCTTTcagggaagaggaggaagacCAGCAACTGAATGAAATGATGCAGAAACTggatacaaagaaaggagacaaaaacaagagaaaatcTCCCATTTCCAAACTGTTTAAGTggaaaaactaaagcaaaacaagGACTGGGTCTCGGGGGAGCTCTATTCTTACACCACACACTTCTGTCCTGTCCGTCTGGTTATGATTTATCCAAGCCTGCATATGTGTCTGGTCAagagaaatgttttcattttgaaatgttaccTTTTGGGGTGAGTAGTAGCACTGCCCATGCTGGTGGGACGGACTCGGACAGAGGGCGAAGGTCGGGCCCGTTCAGCTTGCGATTCACTTCTGTTCCTTCTCGGTCACCGGGATATGCAGTCTTGTGTTGTAATCTCATCCAGTCAGGATGAAACTGAGGACAACAATCCCACCCTCTCCGTCAGAGGAAACGGTTGCCGACGTCTGGAGGTCCTCAGGGTTTTGTGAAGGTCTGGTTCAGGTCTCCagtcatgcaaaacaaaatctgaaccCAGTGTCACggtttaatacatgtttatggATTTATATTCTGTAATTGTGAGAAACTGGTCTTGCATACACTCCGTTAATTATCTGTCCATTGAGATCATGTGTGGTAATTGTTCATTCTTAGTTCTTCATTGCTTGGTTCTCAGGACGATTGGAAGTAACATCCCCCCCAAAACGAATCTTCTCCGCATTTTATCGTTCTGTAGTTAGACAAGTAAATGTGGTCTCACTCGGAGAGATCTGAAACTGTTCACGTTTCTCTCGGTTTAAGCGTCACATTTTTGAATGTCGatttactgttttaatgttCTAATTTATCTTCCAAATGAATTGTTGCCAGTGGGTCTAATTCAGCTTTAAATGCACACCTGCGCATCtctgaaatattattaatgGCGCCGGTGCTTTCGTGTTTGCACATATCAGCGGCACGGAGGTTTGCGTGGTCTTGCATTAACGAACGCGGCTCGTTAAAGAGGAGAAGATCCGCAATACTGAAATTAATTGTCCCGTCTGGGTAGCGGCCCACTGGCACTATGACGAATTCACTTGTTCCTGTTCAGgtttttgcaaaaaaaaaaattaaacttgtACAAGAAAAGCAATAATTTTCAAGAGTTTGTTCCCAGCTCAAGTATGGGGGTGAAACAAGTATAAAACTATAACATGACTTACAGATGATTTaacgtgtttttatttttctaaaatcgGCAACCAAATCGGAATAAATGGCCCTGAATTTCTGTTGAAGAAAGATATTAACAAAATTATCGTAGTTTGATCCATATTGGATTTTTAGTAAAATGCTCCCGTAAGCAACAGAACCCTGTCGCAGTTCTAAAGAGGATCTGatacaaaaattatattttaatggcaAACTTTTATAGAAGCCCTTGGAGAACGGAAATGTCTGGGTGTACGTTGTGCCCGTTTAGGGTTCTCCTATCTTTGGATTGACAACTAAACATGTTCAATTTGTTTAACTGGGAAATAATGGATGGGGCTTGAAGTGGTTTTCCATCAGAAGGTGGCAGTATGGGGCTAATTGTAAAAGACTTGTCAGAATTGATCGTCCACCTCCGGTCCCTGTAGTTGTTGTAAATTCGACCCCAGTGTATAATTGTGCTCTTAAAACGGTTAAAACCGTCTGTGTTCACATCGAGACTTCAGGGGGAAATCTGTGCAAACCTGGGCCTGTTTTCATAATCTTTTACCATCGCAAAATCCCCAAAATATAAATTCCCTGCATATGGAGTCAAACCTCTCCTGTGCAAGATTGACCGTTGTATCATTTTGCACTTCGACTTGAAGGTGTCTGTGGTGGAAAACGTGTTTGCCTTTTcacaactttttaaattgttttaataaaaggttttatgtcttttttttttccccatggaTATGATTGTAGTCTTAACCTTTTAGAACTTCAGAACTGGGAAGGAGATTCAGACTGGTTTGAAATGTGCGtttgtgtaatatttgtatgtctgtttttatgGTTTCAATTTTGTTTGCTGTCCAATAAACCTCTAATATTTACTGATGTGTTTCTGGTGCCGTGAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143020 True 2140 lncRNA 0.40 2 1162890 1166493

Neighbor

gene id symbol gene type direction distance location
AMCG00018082 NA coding downstream 150525 1001676 ~ 1012365 (-)
AMCG00018079 galr2b,LOC107674614,LOC107564701,LOC107753547,LOC108433115,LOC107703387,LOC108257258 coding downstream 184048 971766 ~ 978842 (-)
AMCG00018080 rogdi,LOC105899978 coding downstream 243506 915840 ~ 919384 (-)
AMCG00018078 NA coding downstream 261222 890097 ~ 901668 (-)
AMCG00018073 si:dkeyp-72e1.9,LOC107601283 coding downstream 321968 802720 ~ 840922 (-)
AMCG00018083 NA coding upstream 1172 1167665 ~ 1184993 (-)
AMCG00018085 NA coding upstream 34246 1200739 ~ 1203173 (-)
AMCG00018086 NA coding upstream 41030 1207523 ~ 1208541 (-)
AMCG00018087 ints1 coding upstream 50800 1217293 ~ 1237035 (-)
AMCG00018088 NA coding upstream 70757 1237250 ~ 1248772 (-)
G114183 NA non-coding downstream 249249 913231 ~ 913641 (-)
G114179 glyr1,LOC107721499,LOC107688117 non-coding downstream 259047 902320 ~ 903843 (-)
G114166 ppl non-coding downstream 273802 879311 ~ 889088 (-)
G114044 NA non-coding downstream 663372 498327 ~ 499518 (-)
G114030 NA non-coding downstream 690766 468917 ~ 472124 (-)
G114264 NA non-coding upstream 101800 1268293 ~ 1268816 (-)
G114273 NA non-coding upstream 346500 1512993 ~ 1513642 (-)
G114286 NA non-coding upstream 366963 1533456 ~ 1534985 (-)
G114304 NA non-coding upstream 585403 1751896 ~ 1878375 (-)
G114363 NA non-coding upstream 817159 1983652 ~ 1984149 (-)
AMCG00018077 NA other downstream 236151 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 362419 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 720466 441085 ~ 442424 (-)
AMCG00018113 NA other upstream 818656 1985149 ~ 2006636 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other upstream 840413 2006906 ~ 2067584 (-)
G114430 srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714 other upstream 1115207 2281700 ~ 2288862 (-)
G114549 LOC104962440 other upstream 1442652 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 1470008 2636501 ~ 2647811 (-)

Expression


Co-expression Network