G114237


Basic Information

Item Value
gene id G114237
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 1266840 ~ 1268893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143047
gtggcagcaatacgcttctgTACACCTGCCCCGACctactgttgtatatttttaaattttacaaaacaatcttTAGTGATCTATTTTTATACCCTGTTGTTTAAAAGGACAAtgccttttacatttttagactGAGGGGGAAGGgatattgtaaaatatacttCTGTTAATATAGAGTACGTTGTGTTTATAATCACCTTAATTCCCTATCGCGTCGCATACTTTTTCTAGAACTTTTTCAAGCCAACAGCCCGATCGAGCAAagatttatacttttataaatgTCATTGTGAAGAAGTTGCCCCATCATATATTAAATAGAGAAGCTTGTGGCTCCCAGAACAGCTTTTCTTTATAAAAaccttgtgtgttgtgtgtgatttgtatgtgtctgtgtgtgggctCTGGGATGCGACCATgtggtatttttacatttctaatggAATAAGCAGATATAAAAGCACAGAATTGGGGACTGTagtgaaaactttttttttttttttacttggctCTGTTTAAGGCTTTTTGGACAGACTTGTATGCaagattttaaatactttatccattatatacagctctggaaaaaattgagaccactgcaaaattatcagtttctctggttttactattgaTAGGTatgtgttaaaatgaacatttttgttttattctataaactactggcaacatttctcccacattccaagtaaaaacatgaatggaatgcaatggctgccatacatgtagagatgctgatttaagaacaatCTGCAGTGGTctccattttttccagagctgtataaacaCACCCATTtagatgtatatttaatattcactCTATTTCACTTCAGCGCTGAATAAATTCTTGCCAAAAATCGAACAAGCGAACACACAGGGGTGTCGTGCATGTGAAGCGGCGCTGCGCAGTTCGTAGCTCGTGTGACGCAGCATCACAGTTACACTAAATACACGGCGTTGGGTGAAAAGTGATTCTTCCTCAGATGTCTTATCGATCTGTTTCAGTCTAGAGATTTAAACTGGCATTAGGATGATCTCCAGGGAGCTGGTGTGGATTTTTTGGTACCCAAAAATGTTCCCAAAAACTTCCAAATGGAAGAAGGGTTGCCTGCCGGGGTTTTCATGCCTGGAGATGCTGTAAAAGTGACTGTTTTCCCAACAGAGCACTATTTTTGCAAAAATGTGGTCATACTTTGTCCAGTAAATTACCGAAACTGATGGGCAAACCTGCCCAGCACAGAGTGTATGAATGTCATATTCCAGCAGCTGTTTAgattatatgatatatatatgttgtgatTATGAAACTTTAGCACATTTTAGGATGtaggatatatatttattaagaagctattatataatttatatttatatatatatatatatatatatatatatatatatatatataattttaaaaatcctaCCATGTGCTCAAGTTGTGCTCATCCTTCTACTGTGTATGAAGACAGGACAGTCAGTCTGACGAGTGATCGATTCACGAGGTAATGAAAGTGGGGATTTTAAGGGatctgcttttcaaaataaactccACTTGGAAtacttttgtttcttgtaaGAATTGGAGGCTGCTTTCAAAGAGACGCGTCTCTCCTGTTGTGTTGCTCTACAGACACACAGCGGCGGCCCTAACCGCCGTTCGACAATATGAAACACTCCTACTCTCTCTTAATTCATTACTCTGttcatgtgtattttatttgtacttcagtatttattttcctgtttttttgtttttcatgtataaaTTATTGGATTCATGACTTCAGCCAGGACTCTCGCGTGCATTCAGCCCTCACCTCTCTGTCGAGCTCGGCCCGGAAAGCAGGAGTAATTTATTGCTGTAAATAAAGAGTCTGCTGTGCctgtttttgtacttttcaataaagcatttttctCTTAAGAACGAGTGGCTGCAGCTCTTTTTCCTCCGAGTGCTTCGGTGTGGACGGCCCATTGATCAGTTTCCTAGTGTGGCGAGAGGAAGCAAACCCCATTGCATCACTGCTTTGAATAAA

Function

NR:

description
E3 ubiquitin-protein ligase RNF19A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143047 True 2054 lncRNA 0.38 1 1266840 1268893

Neighbor

gene id symbol gene type direction distance location
AMCG00018084 mafk coding upstream 1306 1262029 ~ 1265534 (+)
AMCG00018081 uncx,LOC106601117,LOC106607339 coding upstream 225309 1036350 ~ 1041531 (+)
AMCG00018076 rogdi,LOC105899978,LOC107719995,LOC105899878 coding upstream 345726 919090 ~ 921114 (+)
AMCG00018075 glyr1,LOC107688117,LOC107590383,LOC107721499 coding upstream 354064 902184 ~ 912776 (+)
AMCG00018069 NA coding upstream 489550 763554 ~ 777290 (+)
AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding downstream 240101 1508994 ~ 1511372 (+)
AMCG00018097 nudt1,8odp coding downstream 480336 1749229 ~ 1752065 (+)
AMCG00018096 NA coding downstream 501263 1770156 ~ 1779659 (+)
AMCG00018104 NA coding downstream 527509 1796402 ~ 1802228 (+)
AMCG00018102 ttyh3,LOC106607330,LOC106601124 coding downstream 542542 1811435 ~ 1846910 (+)
G114205 NA non-coding upstream 88745 1162892 ~ 1178095 (+)
G114056 NA non-coding upstream 713336 553210 ~ 553504 (+)
G114018 NA non-coding upstream 794716 468788 ~ 472124 (+)
G114253 NA non-coding downstream 21662 1290555 ~ 1291851 (+)
G114274 NA non-coding downstream 264582 1533475 ~ 1534982 (+)
G114299 NA non-coding downstream 595664 1864557 ~ 1865570 (+)
G114321 NA non-coding downstream 681368 1950261 ~ 1950500 (+)
G114322 NA non-coding downstream 682322 1951215 ~ 1951599 (+)
G114219 NA other upstream 46624 1219779 ~ 1220216 (+)
AMCG00018072 LOC107720077 other upstream 377807 871321 ~ 889033 (+)
G114123 NA other upstream 472050 777383 ~ 794790 (+)
G114053 snn,LOC107703342,LOC107564698 other upstream 687136 575260 ~ 579704 (+)
G114320 adap1,LOC108228240,LOC107388258,LOC102218716 other downstream 678948 1947841 ~ 1949593 (+)
AMCG00018105 NA other downstream 703945 1972838 ~ 1973924 (+)
G114330 NA other downstream 708111 1977004 ~ 1978727 (+)
AMCG00018106 NA other downstream 710153 1979046 ~ 1982566 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other downstream 978960 2247853 ~ 2266775 (+)

Expression


Co-expression Network