G114430 (srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714)


Basic Information

Item Value
gene id G114430
gene name srl,LOC107553668,LOC107661647,LOC107718567,LOC107695714
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2281700 ~ 2288862 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143313
CTTGCCCACGCTCCAGGGTCCCAGGAACAACACCATTGGCTTGGAGGTGATCTCTCCATCTGTCGCTGAAGCCCCAAGGGTTCGTCCTGGGTAGGCTGAGATCTCGTGCTGCCTCAGCTCGTTGTACTTGTAGGCCTGTTCCAGGGGCTTGATGGAGGTGTGGTAGATCTTCCGGAGGCGCTGAAGTGCCGCTGAGTAGTCATCTGATGGGGCATCCTCTTTGAGCCGGAGGGTCTCCTCAATGTGAGATCTGTCTCGGAGAATAGTATTcagcacctcctcctcctcttCTCTTTCTCCGCTTGGCTCAGAGGCTTGTGATGACAGATGCTCTTCAGCTGGTTCTGGAGAATCTGTGGCCTGTTCCCCGCCGTCGTCTCCTTCAGTTTGGATCTCTTCCCTGTGAGGCGTTCCCTCGCCAGCTGTATCTGATTCTTGGGATGATTCTTGCACTTCCTCGCTTTCCACCTCCTCAGCTTCTCTCTCCTCGTCTGCTTCTGCTCCCTCTGGTGCCTCCTCATCGATCAACTCCGAGGTACTGGGTTCTCCGGTCTCTTTGGAGGAGCCCACCTTTTCTTCTGGATCTTCGTCACTGGGCACCTCTTCAGATCCCGCCTCTGCTTCCTCTGGGTCCTGGTCCTCCACACTGTCAGGACGTTCAGATTCTTCAGACCCACTAAGGTCCTCTGGGTCTTCATCTTCAGACCCCAGATCCTGGTTCTCAGATTCCTCCAGAGAATCCGGCATGTGCTTTGCATCCTCCTCAGCCGCCTCTTCCTCTGAGGAAGATGACTCCGGCTCCTCGTCATCTTGGTCCAGTTGTCCTGTTTCAAGCATTTCAACATCTTCTGAACTGCTATTGTCCCCatcttcatcctcctctccaTCACACTCCTGTGCTTCTTCAGACTGGCTCCGTGGAGTTTCTTCTGCGCTCTCATCACAGTTAGTCTCCTCCACAGTTTCTTGAGGCTCGGTCTCCGGGTCTGGAATTTCCTTCTCATCTGCATCCTGGAATATGTCCTCTTCTGTCTCCAGATCTGTATTCCCTTCTTGGTCCTCTCTTTCAGTCTCAACCAGCTCCACAGTGGCTTCATCCTCCTTTTCTTCCACAACAACATTGTCCGCATCTTCATTTTCTAGGACCAACTCCCCACCCTCCGCCCCAAGAGAGTCTGTGCTGTCCTCTGAATCTTCCAGTCCTTCCTCGCTCTCCTCATTGTCTTCTTCAGAGTCTTGCTCTTCTCCTGAGGGATCGGCTTCCCTGGTCCCTAAACTTTCTTCCTCACCGTCCCGCAGGGAGGCTTGGCAAGCCTGGCACCCAGTCTGCCCGGCCTGGCTCTTGGGGGACAGGTGGTCTTCCGATCTGGGGGTGGCTGACTGGCCCAGGTCATCGTTGGTGTGCAGCACAGCCCCGTTGCAGGTACACATGAGCAGGTCTCCACCatcctgctgcagctgcaggtGCACCAGTGTCTCATCCTCCCTCCCCACGGGGCTGGGGGTCTGTCCCGCCGGG

Function

symbol description
srl Predicted to enable GTP binding activity. Predicted to be involved in endocytosis and endosomal transport. Predicted to be located in membrane. Predicted to be active in cytoplasm; intracellular membrane-bounded organelle; and plasma membrane. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human SRL (sarcalumenin).

NR:

description
PREDICTED: sarcalumenin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143313 True 1519 TUCP 0.56 5 2281700 2288862

Neighbor

gene id symbol gene type direction distance location
AMCG00018122 NA coding downstream 60999 2214872 ~ 2220701 (-)
AMCG00018123 NA coding downstream 72137 2203377 ~ 2209563 (-)
AMCG00018117 NA coding downstream 119318 2160400 ~ 2162382 (-)
AMCG00018118 NA coding downstream 171033 2105605 ~ 2110667 (-)
AMCG00018112 NA coding downstream 200643 2072553 ~ 2081057 (-)
AMCG00018137 NA coding upstream 113436 2402298 ~ 2408795 (-)
AMCG00018135 LOC107566046 coding upstream 122156 2411018 ~ 2420035 (-)
AMCG00018134 NA coding upstream 154845 2443707 ~ 2449697 (-)
AMCG00018136 NA coding upstream 177841 2466703 ~ 2476255 (-)
AMCG00018140 NA coding upstream 204205 2493067 ~ 2497418 (-)
G114363 NA non-coding downstream 297551 1983652 ~ 1984149 (-)
G114304 NA non-coding downstream 403325 1751896 ~ 1878375 (-)
G114286 NA non-coding downstream 746715 1533456 ~ 1534985 (-)
G114273 NA non-coding downstream 768058 1512993 ~ 1513642 (-)
G114264 NA non-coding downstream 1012884 1268293 ~ 1268816 (-)
G114456 NA non-coding upstream 79568 2368430 ~ 2375735 (-)
G114554 NA non-coding upstream 379598 2668460 ~ 2668661 (-)
G114658 NA non-coding upstream 707173 2996035 ~ 2998258 (-)
G114681 NA non-coding upstream 788179 3077041 ~ 3077760 (-)
G114720 NA non-coding upstream 851233 3140095 ~ 3141310 (-)
AMCG00018111 abca3,LOC102775623,LOC102307646,LOC107742093 other downstream 214116 2006906 ~ 2067584 (-)
AMCG00018113 NA other downstream 275064 1985149 ~ 2006636 (-)
AMCG00018077 NA other downstream 1354961 922278 ~ 926739 (-)
AMCG00018074 NA other downstream 1481229 777387 ~ 800471 (-)
G114021 gna12,gna12a,LOC107674729,LOC107753491,LOC107703403 other downstream 1839276 441085 ~ 442424 (-)
G114549 LOC104962440 other upstream 320283 2609145 ~ 2609479 (-)
AMCG00018142 NA other upstream 347639 2636501 ~ 2647811 (-)
G114838 NA other upstream 1739154 4028016 ~ 4087031 (-)
G115020 NA other upstream 2297200 4586062 ~ 4588297 (-)
AMCG00018220 NA other upstream 2357285 4646147 ~ 4651641 (-)

Expression


Co-expression Network