G114548 (LOC104962440)


Basic Information

Item Value
gene id G114548
gene name LOC104962440
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2609143 ~ 2609412 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143455
gttggatggggagcatcggtgcacagccattttcagatctctccagagatgttcaatcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgttatcttggctgtgtgcttagggtcgttgtcctgttggaagatgaaccttcgccccagtctgaggtccagagcgctctggagcaggttttcatcaaggatgtctctgtacattgctgcattcatctttccctcgatcccgAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC104962440

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143455 True 270 lncRNA 0.52 1 2609143 2609412

Neighbor

gene id symbol gene type direction distance location
AMCG00018138 NA coding upstream 29786 2574395 ~ 2579357 (+)
AMCG00018132 NA coding upstream 144385 2449789 ~ 2464758 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding upstream 165615 2434456 ~ 2443528 (+)
AMCG00018133 NA coding upstream 175487 2433398 ~ 2433656 (+)
AMCG00018131 NA coding upstream 176161 2421265 ~ 2432982 (+)
AMCG00018146 NA coding downstream 89416 2698828 ~ 2717437 (+)
AMCG00018145 NA coding downstream 108090 2717502 ~ 2747393 (+)
AMCG00018144 NA coding downstream 173650 2783062 ~ 2786522 (+)
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding downstream 178961 2788373 ~ 2793873 (+)
AMCG00018150 NA coding downstream 205035 2814447 ~ 2827770 (+)
G114531 NA non-coding upstream 35276 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 191347 2416807 ~ 2417796 (+)
G114484 NA non-coding upstream 196354 2410477 ~ 2412789 (+)
G114359 NA non-coding upstream 558966 2048571 ~ 2050177 (+)
G114346 NA non-coding upstream 587513 2006906 ~ 2021630 (+)
G114553 NA non-coding downstream 59048 2668460 ~ 2668661 (+)
G114555 NA non-coding downstream 61495 2670907 ~ 2742686 (+)
G114613 NA non-coding downstream 234893 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 255576 2864988 ~ 2867237 (+)
G114629 NA non-coding downstream 273020 2882432 ~ 2882968 (+)
G114518 NA other upstream 40205 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 342368 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 626577 1979046 ~ 1982566 (+)
G114330 NA other upstream 630416 1977004 ~ 1978727 (+)
AMCG00018105 NA other upstream 635219 1972838 ~ 1973924 (+)
G114551 NA other downstream 31434 2640846 ~ 2647774 (+)
AMCG00018196 NA other downstream 1576998 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1985521 4594933 ~ 4604105 (+)
G115049 NA other downstream 2152106 4761518 ~ 4763905 (+)
G115299 NA other downstream 3340051 5949463 ~ 5951017 (+)

Expression


Co-expression Network