G114555


Basic Information

Item Value
gene id G114555
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 2670907 ~ 2742686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143463
AAGGCATTTCAAACTCAATGTTTCAAAAGGAAATTTAACCATTTTGGACGCCATTTCACCTGCTCTTATCTGATCTTATTTTATCTTTCGGTCTCATCAGGATAATAAGGCAGGATCATTCTGGCAATCATTGCTTTATACAGAAGACAAAAGATAACTGTTGATATGTTGTTTCGGGCTGGTGTGTTATAGTGAACAGTGCAGAGATGGGTAGTAGTGTTCAGATTAAACCACATGACTGTATGTCACAGATACAAAGGACCTCAGAAAATTTGAACAGTTTGTTTTACCtcacaatttataataatattaataataggaGAAACACATTCTTGTATCCAATCTccaaatatgtataaatgtgaaatgtgaaataacaaaatgtacttGCTGGAATGTGCACAATCATTGTgcataaagtatttaaaacaaccATTGTTTACTTAAACACAGTAAGTATTTATAATGAGGCTATAAGCATCATAAAATGAAGTTTCGgttatgtttgtgttgtgtcaATTATGTCTcggtaaattattaatttgaaagaaGGAAGAATTTGTTGGGATTCCTATTGTTTTAACACAGACCGTTCAGAGAGATgcattctcattttattttatttttaagattattttagaGGTTCAAAAGTCAATGATGGGGAGAACAGATCAGCCAATGTGATATTACACTAAAATATAATAGTATGAtacaatagagagagagagatgttagATTACATGCAGAAGGCTGCCGAATTTGACCTAGTCTTAATGTATTgccatgaaatacattttattaatcgAACTGGAACTTTATCATTTTGAACAATGTGCTGCAAATGGGTAATAAGATAACTTGACTACAATCAATACCTGAGTTTGCACACCATTAAATCTATTAAGTATATCTTTACTTGTAAAATAACATATGGTAGTGAAGACATTTATGGGAATGAATGCTTGACTACAATCTTTCCCCACGTGAGTAGAAAGACACTtgactgttttttgttccaactgagcttaattaagtaacaatctgcttagattttacttttaaaagcgtgtaataaaagagttggttctttaataagttatttatacaaatttATACTTACCTTACAACCCCtttaaggaaattattagttcaattaagggttcaattaagtaattgagagctcagttggaacaaaaaccagcagggtagggggtactccaggac

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU143463 True 1224 lncRNA 0.32 2 2670907 2742686

Neighbor

gene id symbol gene type direction distance location
AMCG00018138 NA coding upstream 91550 2574395 ~ 2579357 (+)
AMCG00018132 NA coding upstream 206149 2449789 ~ 2464758 (+)
AMCG00018130 LOC105893914,LOC107598040,LOC107571734 coding upstream 227379 2434456 ~ 2443528 (+)
AMCG00018133 NA coding upstream 237251 2433398 ~ 2433656 (+)
AMCG00018131 NA coding upstream 237925 2421265 ~ 2432982 (+)
AMCG00018144 NA coding downstream 40376 2783062 ~ 2786522 (+)
AMCG00018149 LOC107753764,LOC107661878,LOC107718604 coding downstream 45687 2788373 ~ 2793873 (+)
AMCG00018150 NA coding downstream 71761 2814447 ~ 2827770 (+)
AMCG00018148 NA coding downstream 136882 2879568 ~ 2881846 (+)
AMCG00018155 NA coding downstream 168935 2911621 ~ 2915341 (+)
G114553 NA non-coding upstream 2246 2668460 ~ 2668661 (+)
G114548 LOC104962440 non-coding upstream 61495 2609143 ~ 2609412 (+)
G114531 NA non-coding upstream 97040 2573637 ~ 2573867 (+)
G114485 NA non-coding upstream 253111 2416807 ~ 2417796 (+)
G114484 NA non-coding upstream 258118 2410477 ~ 2412789 (+)
G114613 NA non-coding downstream 101619 2844305 ~ 2845453 (+)
G114624 NA non-coding downstream 122302 2864988 ~ 2867237 (+)
G114629 NA non-coding downstream 139746 2882432 ~ 2882968 (+)
G114674 ubfd1 non-coding downstream 359480 3102166 ~ 3103170 (+)
G114699 NA non-coding downstream 425477 3168163 ~ 3168982 (+)
G114551 NA other upstream 23133 2640846 ~ 2647774 (+)
G114518 NA other upstream 101969 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 404132 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 688341 1979046 ~ 1982566 (+)
G114330 NA other upstream 692180 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1443724 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1852247 4594933 ~ 4604105 (+)
G115049 NA other downstream 2018832 4761518 ~ 4763905 (+)
G115299 NA other downstream 3206777 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3412802 6155488 ~ 6160616 (+)

Expression


Co-expression Network