G114674 (ubfd1)


Basic Information

Item Value
gene id G114674
gene name ubfd1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3102166 ~ 3103170 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143616
TTTTGCCGGCATAAaggctcttttttattttcctccgcTTTAACTTCTTGCTGAATTGCTTCTTTAGGCGTATTTACTGCTAAAACATCGTTAATTGTTGATCCTACCACCATTATTTTTGCACCATTAGTTACTTTAATGTCACGGAGGGTCTTGTCTTCTGGTAGAAGCCCCTTATACATCACTTTTTGCATAGCAGGTGGAAGacCTGTAAGTGAATGGATTCTCTCTTTTAAATTGGCTCCTGTCCCATCCAGAGGCATCTTTAAATcatacttgtttttgttccagatAATTTTCAGCTCCACCATTTCTTTCCCGTCGTCGGTGTCATCCCCGTTACTGACACCCGACCCCTGAGCGTTGGAGTTCTCCTCCACATCGGCATCCCCCTCTCCGGCCTTCTCGCACTTGACCACCGCCTCCTTCTTGGGACTGGCTTCAGCTTCCATAACGACACCTTCACTTCCTGCAGGAAAACACAAGGATGTAGGCATACTTGAACCCCGGACTCCGGAAGCCCAGCTTCCAATGTCAACTGTTTATGGGACgactttttcatttgtaatgtgttgGCGCTCACTCTGGTCAACAACAGTGCATCTCAGTTGTAATGCACTAGTTTTCTACATTGCCATAGATTGTTGTTCAGTGTCATATTAATTAATACCAAACACAGacagtaatttgtttaaattcattattatgaTCTTCTCGCCCAGTATTTTACATTGCCCTGACCGCCCTGTGTG

Function

symbol description
ubfd1 Orthologous to human UBFD1 (ubiquitin family domain containing 1).

NR:

description
PREDICTED: ubiquitin domain-containing protein UBFD1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143616 True 752 lncRNA 0.44 2 3102166 3103170

Neighbor

gene id symbol gene type direction distance location
AMCG00018159 NA coding upstream 106611 2976735 ~ 2995555 (+)
AMCG00018158 prkar1b,LOC107653458,LOC107661853 coding upstream 136847 2949891 ~ 2965319 (+)
AMCG00018163 NA coding upstream 153470 2947434 ~ 2948696 (+)
AMCG00018156 prkar1b,LOC104941536 coding upstream 167411 2925415 ~ 2934755 (+)
AMCG00018155 NA coding upstream 186825 2911621 ~ 2915341 (+)
AMCG00018166 NA coding downstream 1850 3105020 ~ 3122175 (+)
AMCG00018164 NA coding downstream 21450 3124620 ~ 3139596 (+)
AMCG00018165 NA coding downstream 51852 3155022 ~ 3160029 (+)
AMCG00018173 NA coding downstream 536752 3639922 ~ 3663201 (+)
AMCG00018172 LOC103021790,LOC108433116,LOC108256804,LOC107741797,LOC107574133 coding downstream 577551 3680721 ~ 3681332 (+)
G114629 NA non-coding upstream 219198 2882432 ~ 2882968 (+)
G114624 NA non-coding upstream 234929 2864988 ~ 2867237 (+)
G114613 NA non-coding upstream 256713 2844305 ~ 2845453 (+)
G114555 NA non-coding upstream 359480 2670907 ~ 2742686 (+)
G114553 NA non-coding upstream 433505 2668460 ~ 2668661 (+)
G114699 NA non-coding downstream 64993 3168163 ~ 3168982 (+)
G114731 NA non-coding downstream 133873 3237043 ~ 3237244 (+)
G114806 NA non-coding downstream 912908 4016078 ~ 4018982 (+)
G114867 NA non-coding downstream 1090172 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 1091107 4194277 ~ 4198050 (+)
G114551 NA other upstream 454392 2640846 ~ 2647774 (+)
G114518 NA other upstream 533228 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 835391 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 1119600 1979046 ~ 1982566 (+)
G114330 NA other upstream 1123439 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1083240 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1491763 4594933 ~ 4604105 (+)
G115049 NA other downstream 1658348 4761518 ~ 4763905 (+)
G115299 NA other downstream 2846293 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 3052318 6155488 ~ 6160616 (+)

Expression


Co-expression Network