G114699


Basic Information

Item Value
gene id G114699
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 3168163 ~ 3168982 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143647
AGATTGTAACAGCTGGGCAACAATGTTTCCTTTAACGGAAACATAGGAAGTGATCATTTCAGCttcatgtcattttatttgtatttcagcaCATTCAAGTTCATTAACCTGCTTCTTTTTCATCCAGAGACAATCTGTGAATCTGGGGGACTGTGTGGTGTATTTTTGGCTGAATTAATCCCTTAATGAAGTTTCGTCTCCACACGGATGCTGAGACTCAGCAGTCTGGAAGTGCTGTGACTTCTGCTGAATGGAGAGGCAGAGATTTTCTCAAGGAGAGAGACACCTGGAGCAGCCGAGGGACATCTTAATATAACTGGGGATCGTGCCTAATCTGTTTTTAGGCATCACACAACTCACTTGATGTCTTTAAAGTGTTTGGTAACCtcagaatatgtatttattcatttattaattacacaaaGGAGATTTCAAGGTGAGGATGGATTCTTGCTCGGGTACCACAATGGAAGTTAATAcatctattttattaaatttgtacaaataaatatgtatggtTACTGTACAATACCTTCTGAGTTTATGATTATGTCCTTCAAGGACTCTGAGAGCTGAAGGTTGGctggttgatttatttaactgcAGATGTGGGTAAGATTCCCAAAGAACGC
>TU143648
AGATTGTAACAGCTGGGCAACAATGTTTCCTTTAACGGAAACATAGGAAGTGATCATTTCAGCttcatgtcattttatttgtatttcagcaCATTCAAGTTCATTAACCTGCTTCTTTTTCATCCAGAGACAATCTGTGAATCTGGGGGACTGTGCAGTGGTGTATTTTTGGCTGAATTAATCCCTTAATGAAGTTTCGTCTCCACACGGATGCTGAGACTCAGCAGTCTGGAAGTGCTGTGACTTCTGCTGAATGGAGAGGCAGAGATTTTCTCAAGGAGAGAGACACCTGGAGCAGCCGAGGGACATCTTAATATAACTGGGGATCGTGCCTAATCTGTTTTTAGGCATCACACAACTCACTTGATGTCTTTAAAGTGTTTGGTAACCtcagaatatgtatttattcatttattaattacacaaaGGAGATTTCAAGGTGAGGATGGATTCTTGCTCGGGTACCACAATGGAAGTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU143647 True 632 lncRNA 0.39 2 3168163 3168982
TU143648 False 479 lncRNA 0.41 2 3168163 3168826

Neighbor

gene id symbol gene type direction distance location
AMCG00018165 NA coding upstream 8134 3155022 ~ 3160029 (+)
AMCG00018164 NA coding upstream 28567 3124620 ~ 3139596 (+)
AMCG00018166 NA coding upstream 45988 3105020 ~ 3122175 (+)
AMCG00018159 NA coding upstream 172608 2976735 ~ 2995555 (+)
AMCG00018158 prkar1b,LOC107653458,LOC107661853 coding upstream 202844 2949891 ~ 2965319 (+)
AMCG00018173 NA coding downstream 470940 3639922 ~ 3663201 (+)
AMCG00018172 LOC103021790,LOC108433116,LOC108256804,LOC107741797,LOC107574133 coding downstream 511739 3680721 ~ 3681332 (+)
AMCG00018174 NA coding downstream 663595 3832577 ~ 3849146 (+)
AMCG00018175 NA coding downstream 699403 3868385 ~ 3877825 (+)
AMCG00018179 pdpk1,LOC100380750 coding downstream 731531 3900513 ~ 3910188 (+)
G114674 ubfd1 non-coding upstream 64993 3102166 ~ 3103170 (+)
G114629 NA non-coding upstream 285195 2882432 ~ 2882968 (+)
G114624 NA non-coding upstream 300926 2864988 ~ 2867237 (+)
G114613 NA non-coding upstream 322710 2844305 ~ 2845453 (+)
G114555 NA non-coding upstream 425477 2670907 ~ 2742686 (+)
G114731 NA non-coding downstream 68061 3237043 ~ 3237244 (+)
G114806 NA non-coding downstream 847096 4016078 ~ 4018982 (+)
G114867 NA non-coding downstream 1024360 4193342 ~ 4193996 (+)
G114868 NA non-coding downstream 1025295 4194277 ~ 4198050 (+)
G114888 NA non-coding downstream 1129656 4298638 ~ 4301678 (+)
G114551 NA other upstream 520389 2640846 ~ 2647774 (+)
G114518 NA other upstream 599225 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 901388 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 1185597 1979046 ~ 1982566 (+)
G114330 NA other upstream 1189436 1977004 ~ 1978727 (+)
AMCG00018196 NA other downstream 1017428 4186410 ~ 4193330 (+)
AMCG00018216 telo2 other downstream 1425951 4594933 ~ 4604105 (+)
G115049 NA other downstream 1592536 4761518 ~ 4763905 (+)
G115299 NA other downstream 2780481 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 2986506 6155488 ~ 6160616 (+)

Expression


Co-expression Network