G114868


Basic Information

Item Value
gene id G114868
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4194277 ~ 4198050 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU143859
GCCTTTGCTTTTTGGAAACAGATATCCTTTCCCATCGTTATCAGTTGTAAaagtcaatatttattttatcctaTTTCCAACCAGATCACATTGAACTCTCTCCTCTCCGTGGGCTTCATTCAAAGGGTCAAGCACCAAATCCTACCTTTCCTTTTCCTCGCTGCGCTCAAAGGCCTGGTCCAGTGGCTCTCTGTGACTGAACAGGGTTccttacagacacacacacatggaaaaGATACAGCTTATGGTGCAAGATTGTATATTTATGTCAGAATTGCATTGTGACAGAGAAAGTTTTAACCTTAACCTTATAAGATCGCTGAATGAAAAAAACCCAAACAGTATATTTTCTATGCAGATCATGAATACAATTGTAACAATCATCccagcacagcactgacacaaagCGATTGACGCAGTCATTAACGGCAGAAAGTGAAAAGGGTGTTTTCTCTTAGGTACATTTCTTTTTGACCACTTTTCTGACAATTTTCGGATTGTTGTAAGTGTTTGTAATAATGGCTACAGTTTCAAAGCATTCTGATCAGAGTTCCTGATGGGAACCAGCTTCAAAGCTATTAAGGATTTAACAGGTATTTAGGTCATAAGTtgtaactgaactgaactgaaggcTAAAATGTGTAGATGGATAATAAACGAACCCTAAAGCTCAACTACTTAATTTAATAGAtcagttacttaattggtctCCAGTAACCCCTTTCTCAGGTCTTTAGTTGATGGCAGATTAAAGAGATTTATAATCCCTGCAGGATGTAGCTCTCCAGAGACAGATGTTGGGAACTATGATTATAAAATATCAACTGTAactgtttaatatatacatttaaatggacTTTCCTGTTTGTAAGCAAAGTTTCCCTCTTTTCATATTAAATTCAGCTGTCATTTCCAGACAGAATGGCTTCGCCGACATCCTGTTCTGTGGTCTTTCACATTCACCCCCTAGATCTGTTACCTTTTCAGTTTGGACAGTTACAGTCTTGGCTCAAACAACCAAACTAGGTACGCTTTTGATTCAATCTATTAATAGCCAGGCTCCGGGAACCTGACTTGTTGGAATTAGGTTTTTGAGAGAAGGCAGGTTATTTAGCGGTGTCTGCTTTTGATTGTCTTGGCACCAGGGGTGACTGAGAGcgagcaaacaaacaagatcGCTCATGAATTGTGGCACATAAGGAGCCTTAGAGTAAGACCTTAAACTGGGGATTGCCCTCCTCCTCAAATAATTACCTTAGAACACTGTAAAATCAGGCATTCTAATGTAACAGGAACAGATCCGTACCATTGTAAAATTAGCAccccacaaaaacaacaaaagtatgTTATTCTCATGGTTATTAAAGTCATTAAGTCATTAAATCactcttgtgtttttgtgtgtgccaTCTTGGGCTTGGTGTGCTGTCTCACTTGTACTATCTCCATGTGATGACGTCTCATTTTAGAATGATCAGGGATCTGTTTGTGGGTCTACACCTGTGATGGGCAACTCTGGTCCTACAGGGCTACAGTGTCGTCTGCTTTTTGTCCCACTGAATCGAACTGTTGATCTGCCGAAGTGAAACAATGAAGCTATGGTCCCAAGTTATGAGCAGGGAGGGATGCAAGAAGACCTAAAAAGGGCCAAGGTTGCCCACCACTCTTCTACACCCGTGGAATATGAGAAAATGATTAAACTGTGGCATACATCTCTAGACTGGAATGACACGCCTACCGACACAGCTCACCCCTCATCTATCCTTCCACCTTCGCAGAGTTTAGCGGGCAACCCTGGAAGTGTTCATTGCCAATGTCCCGCAGGTCGGACCCAGCTAAGCTGGAGGGGCTGCTGCAGGTGATGTTGTTGTAGACCTGGACAACCGAGTACGGCTCCTCTCCCTCGACCAGGGTCTCCACCTGACGGGGGACCGCTCTCGGTTTGCTCAGGCTGTAATCCCTGAGGGGCAGGGCGGTGCAGTCGCAGTTCCAACGGTTCCCGCCCAGCCACAGCTGATCCATACTGTCGGGGATCTCGGCGGGGAAGGTGGTCAGGGCGTTGTCCTTGAGGTTCAGATAGCGCAGCTTGGGGAGGAGCTGCAGGGTGCCGTTCAGGAGAGACTCCAGCTTGTTTGAAGACAGATCCAGCCAGGACAGGCACTGGAGGGGAAGGAAGACCTCCGTGGGGACTTGCTGGAGCAGATTGCCGCCCAGCAGCAGGTACTCCAGGTTCTTCAAACCAGAAAATGTGTGAGAAGACAGGGACTCCAGATTGTTGAACCTCAGGTCCAGCTGCTGAAGCCCTGGGAGCTCCGCGAAGCTCTGGCGCTCGATCAGAGAGATGTTGTTGCGCTGCAGGAAGAGCCGCCTTAGTCCCGTCAGCCCGGATAAACCCTGAGGTGAGATTTTGACCAGGCAGCTCTTATCCAGGTGCAGGCTGTGCAGCTTAGACAAGCCCTTGAAGACCTGATCCGGGAAGCTCCCGAAGCAGCTACCGGACAGATTTATGATTGCCAGGTGGGGCAGGCCGAAGAAAGTCCCCATGCGTGCCTCCTGTATCTGGTTGTGGTCCAGCTCGAGCACCTCCAGGTGACTCAGTCCCTCAAACACACGATCGCCGAGCACCTTGATGCGGTTGTGGCTCAGCCGCAGCTCCTCCAGGTACTGCAGGTCGCGAAAGGTCCTGGGGCGCAGCTGGCCAATGGCATTGTTGGAGAGCCGTAGGACATGCAGGCTGTGCAGGCCAAGGAAGGTCTCCTCATGGAGGCCGGACAGCCGGTTGTTGGTGAGGTCTAACCAGCGTAGGGACTTCATGCCCACAAAGGCTCTGGGTGCTACAGTGTGAATCTGGTTCTGGCTCAGGTAGAGCTTATGCAGCTTTGGCAGCTTCGGAAACACATTGGCCTTGATGACCTTCAGGAAGTTTCCTGTGAGGTCCAGCTCCTTTAGCTCCACGAGGCCATGGAAGAGCTGTGGCTGCAGGTAGGCCAACTTGTTCCCCGCCAGTACCAGCTCCCTGAGACCCTGTAGGTCCCGAAAGCTGGTCTCTGGGAGCACCACCAGGGAGTTCCAGCCCAGGTTAAGCAGCCACATGCTGGAGAGCCCAGAGAACAGGCCCTCCTCAATGCGCAGCAGCTGGTTTTTATGGAGGCTGAGGGACGTGATGCTCGGGGTGTTCTGGAAGATTGAAGCAGGGAGAGAACGCAGACGATTGCGCTCCATGTGCAAGTAGGACAGGGACCGAAGCCCGCGGAAAGCCTGGGGGTCTAAGCTGGACAGCTGGCTGCTCTCCAGGTTCAGGAATTCCAGGCTGGACAGGTCTTTGAAGGCTGAGGCTGGCAGAGAGGTGAAAAGGTTGTTGTCCAACCACAGGGAGCGAGCGGCCGGGGGGATGTCGGGGGGGATGTGTGTGAGGTTGAGAAGGTTGCAGTACACGCTGAGCTCGGAGGTGAAGGTATTGCGCTGGCAGGTACAGCCCTCGGCACAGGGAATCGGCTCCTCTGTTGGGGGCACGTCTCCTTCCAGCGTTTGCTCTGGAGACGCAGCCAGCACGGCCAGGACACAGCCCAGGATCACGGAGGTATACATCACCGCTGAGGGGAGATGCCGCAGATAAGTCACAGATTCCTGCCCCTGTCACAAACATACACCATTTCACATTTGATTTGGAATATCAAAGCATGCATCAcatctttccctctctttcgATACATGTATGGTTATGTATGTCACTatttccaattattatttttctaagtgCAAATACAAGTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143859 True 3774 lncRNA 0.49 1 4194277 4198050

Neighbor

gene id symbol gene type direction distance location
AMCG00018189 NA coding upstream 22352 4169235 ~ 4171925 (+)
AMCG00018190 NA coding upstream 31677 4160391 ~ 4162600 (+)
AMCG00018191 NA coding upstream 39842 4139448 ~ 4154435 (+)
AMCG00018182 NA coding upstream 117481 4069108 ~ 4076796 (+)
AMCG00018183 LOC107377396,LOC105355442,LOC107556640,LOC106912265,LOC107572204,LOC101073377,LOC107681642 coding upstream 130322 4060811 ~ 4063955 (+)
AMCG00018197 NA coding downstream 11083 4209133 ~ 4211747 (+)
AMCG00018203 LOC106579217,LOC108264572,LOC106578255 coding downstream 97558 4295608 ~ 4296231 (+)
AMCG00018204 LOC104948217 coding downstream 144884 4342934 ~ 4347960 (+)
AMCG00018211 xpo6,LOC106600647 coding downstream 296393 4494443 ~ 4515088 (+)
AMCG00018214 NA coding downstream 320413 4518463 ~ 4524338 (+)
G114867 NA non-coding upstream 281 4193342 ~ 4193996 (+)
G114806 NA non-coding upstream 175295 4016078 ~ 4018982 (+)
G114731 NA non-coding upstream 957033 3237043 ~ 3237244 (+)
G114699 NA non-coding upstream 1025295 3168163 ~ 3168982 (+)
G114674 ubfd1 non-coding upstream 1091107 3102166 ~ 3103170 (+)
G114888 NA non-coding downstream 100588 4298638 ~ 4301678 (+)
G114940 NA non-coding downstream 188130 4386180 ~ 4386889 (+)
G114984 NA non-coding downstream 391245 4589295 ~ 4590074 (+)
G114985 NA non-coding downstream 395410 4593460 ~ 4593845 (+)
G115061 NA non-coding downstream 615968 4814018 ~ 4814419 (+)
AMCG00018196 NA other upstream 947 4186410 ~ 4193330 (+)
G114551 NA other upstream 1546503 2640846 ~ 2647774 (+)
G114518 NA other upstream 1625339 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 1927502 2247853 ~ 2266775 (+)
AMCG00018106 NA other upstream 2211711 1979046 ~ 1982566 (+)
AMCG00018216 telo2 other downstream 396883 4594933 ~ 4604105 (+)
G115049 NA other downstream 563468 4761518 ~ 4763905 (+)
G115299 NA other downstream 1751413 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1957438 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 2512432 6710482 ~ 6747438 (+)

Expression


Co-expression Network