G115049


Basic Information

Item Value
gene id G115049
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 4761518 ~ 4763905 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144084
tccAGGTGGAAACCTTCTCAGCAAGGACCAAGCGACAGTGCGAcggcactctctctctctcccggcgTCTCGCACACGGCCGCCGTCACCAGCTGCGACTCCACCGAACACGCGGGGGCCACCGGGCAACAGAGGGACACGGTTATGGCTTCGAACAGCGAGAAAAACGCACCTGCATTGTTAGCACTGGGAGGCGACAGTGTCTCTTCTAGGGATGAGAATGGGTTCTCCAAAGAAGAGcaacaactctctctctctcatttggAGGAGATTACAAACGCTACCTGTGGTGAGTTTGCTTCGTCTTCTTGCATATTTGACTCTGGGCCTTGATGTGTCAAGTCTGAccctgtatttattattcttgtttcaAATCATGCTAATGAATGATGGGTATtgttgtagaaaataaaaataataaaccccCACACACATTGCAAAGCATTTCAGCTGGAGGCATGTGACCCAATCCAAGATCAATTAATGCGGAAACGCTGATCTGAGCGCTGCTTTTCTATTTGAGGAATTAAGTTATCAAATATTAACTGAGCACTCGCTTCAGGTACGCTTGGTCATCGTTTGCAGTTaataaagagggagagaggtgccTCTGGGAACCACGACGGCTGGGTTTTCTTTTCCCAAGCGCCAGGAGATGACAGCCAGAGCTCAGGGTCCTCTTGGCACTGCAGGAAAAACCCTCCCTCCAACGGGAGACACCAGCAATTCTCAACTGGGGGAGACAGCACAGCCGTCTGCCTGTCGCAAGGAATTCTGGGCCCGGCCATCGCTTCTCTCCTCATGTGTTCACGGGGATCGTGTGAAATTTAAACTCTCTCAAACCTGATTAGTTAAAGAAAAATCAGTAATTGTGACTTGAACTTAGCAAAATGACACCACAGTGGGTTTTGACAATTATTCTCATCATTAGTTCTGcagtataaattatatatatatatacacacacacacataaaaaagaaactacGTTTACGGAGCGAAAAATGATAAATGACTGGTTTTACATGATTCAAGTATGGGTTATAATCAGTCCTCTGAACAATAAAATTCAAATGCATCAGGTCTTGTCCTCCTCTGGCCATTTAGCCCTGGATTGAATCTAAAACTTCCCACCCGATAATTGCATTCTATAACTCCAGCACTCGATGGCCGGTTTCTATACGGGTTCTTGCTTTTGCCCCATGGAAACCCCCCAACAAGCAGGACTGCAGCCTGTGACGGGCGCGTGGGTGAGTCTTGATTAAACCCTGAACAATAAACCCATTGACACCTGATCAGTGAAACCGACTCTCGTTTTCCAGCTGCCCACTGCCGCTCAGCACGAGCACTGCCCCCCGCTCCGCTGTGCGCTCTGAGGTGAAGGGGTGGACCCAGAGCGGCGCAATGCAGGTGCGTTTCATGAACCTGAGGAAGTACCCTGTGGGAGTACCGTGTGCTAAAGGAAACCAGcaactaaaacatgttttaaaaagcacGATCATCATGAATCCATTTCCAGCTCGAGATGCGGCCGGAGCCCGCATTCTGTACCAGTCCTTGGCACCGCAGCCTGGGCCCACAGACAGCAGCCCACGTGCCAAGCGTTCCCCGGTCACTCCCAGCCCATCTCTGGAGGGCAGAGAGGATGGGTCTGCCGTCAGTTCTGTCAAAGGGAGGATTGGCTCAGTGTGAAAAACGAGGCCGGCTCAGTCGGTACCTCGACCCCTGATCCCTTTACAGCGCCTGGGAGAAGCCAGAGGTGGCGGACATCAGCCTTTTCGTATTACATTTATCTGAAATCGTGAGAAACTCAGCTGCCACGTTTACTCTCCCTTGGCCAACTGCGATGCACTGGTCCACCGGGGGGGAGTGGGATAAACCCTGTCAGCGAATTATTTCTTTCCCCAGAAGCGCAGGCTTGTCCGCACCTCGGTCAGTTTAAAACAGCAcgtaaaaaaaaagtgcaagaGGACCAAAAAATATTTGGCAGGACAAGGATCTCTGTTAAAAATAAGAAGAGTAAAAGTGCTGTTCTtcttttcctttataaaacacagTCCTCCCCTACAAAAGGtctatatataagtatatacatGGTTATTTTCTCCTCCCGCGCCGCGTGGCAAGCCGCCGTCATAGCGGGCGCGGCCGGTGCAGCCCGTCGATGTCGGGGGTCAGCTGGGGGCTGTGCGTGGCCTTGGTGGGCGTCCAGTCCCCCAGGGAGGCCTGCGCGGCCTTGCGGTGCGCCAGCCTGTGAGTGATGGAGAAGCCGGCGTTGCCCTCCAGCTGCGACAGCACGACCAGCACCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144084 True 2310 TUCP 0.51 2 4761518 4763905

Neighbor

gene id symbol gene type direction distance location
AMCG00018224 NA coding upstream 13351 4747310 ~ 4748167 (+)
AMCG00018225 NA coding upstream 23626 4732148 ~ 4737892 (+)
AMCG00018217 NA coding upstream 115252 4641158 ~ 4646266 (+)
AMCG00018218 NA coding upstream 121649 4629400 ~ 4639869 (+)
AMCG00018215 tmem204 coding upstream 141231 4610842 ~ 4620287 (+)
AMCG00018231 amdhd2,LOC107661858 coding downstream 52925 4816830 ~ 4819594 (+)
AMCG00018233 NA coding downstream 111022 4874927 ~ 4883853 (+)
AMCG00018235 NA coding downstream 209045 4972950 ~ 4994168 (+)
AMCG00018234 LOC106579194,LOC106578326,LOC105031632,LOC103369159 coding downstream 258687 5022592 ~ 5023227 (+)
AMCG00018237 LOC102777150,LOC102206336,LOC101478571,LOC100698643,LOC101065496 coding downstream 294473 5058378 ~ 5059421 (+)
G114985 NA non-coding upstream 167673 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 171444 4589295 ~ 4590074 (+)
G114940 NA non-coding upstream 374629 4386180 ~ 4386889 (+)
G114888 NA non-coding upstream 459840 4298638 ~ 4301678 (+)
G114868 NA non-coding upstream 563468 4194277 ~ 4198050 (+)
G115061 NA non-coding downstream 50113 4814018 ~ 4814419 (+)
G115099 NA non-coding downstream 331243 5095148 ~ 5100938 (+)
G115188 NA non-coding downstream 552548 5316453 ~ 5317925 (+)
G115201 NA non-coding downstream 580582 5344487 ~ 5344947 (+)
G115331 LOC100136012 non-coding downstream 1282125 6046030 ~ 6046534 (+)
AMCG00018216 telo2 other upstream 157413 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 568188 4186410 ~ 4193330 (+)
G114551 NA other upstream 2113744 2640846 ~ 2647774 (+)
G114518 NA other upstream 2192580 2491313 ~ 2568938 (+)
AMCG00018119 tfap4,LOC107661646,LOC107718566,LOC107553667 other upstream 2494743 2247853 ~ 2266775 (+)
G115299 NA other downstream 1185558 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 1391583 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1946577 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 3129722 7893627 ~ 7894449 (+)
G115648 NA other downstream 3355873 8119778 ~ 8122171 (+)

Expression


Co-expression Network