G115157


Basic Information

Item Value
gene id G115157
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5227980 ~ 5243187 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144208
GTGTGTTGTGGCGagtaATGAATTATCAACGTTTACAGTCAaggataacaacaacaacaacagtggcCACACCAGTCCCTGCCTTTACTGAAGTGGCgtacagtgtgttgtgtaaaGGGCAACGAACGTCTGTTTAACGACACTCCTAAACAgggcatttataaatataagtaGAAGCTTTGCCGTCACTACAACGCCACCCAAACGTGGAATAAAGAGTCTGCCTCTCCCAAGCTCCTTTCCAGCCTCTACTGGGGATGAATCTGGGAGAAAATCTCTTCATCCGTCCCCGCAGTGGGTGGATCGCTGCCCTCACACCGCAGTCCCCTCCCGGCGCTGCTGGCTCTCCTGCCGTCTGAAGTAGTCCTTGTTGAAGTGGGCTTTCCTGTGCAGGTCAATGGCGGGCTCCTCCCCCAGAGGCCGGCCCTCCTTCTGCTTCTGCGCCAGGATCATGGCGCGCAGGAGGGGCGGGTACGGCACGTGGCGCACGCCGGTGTCAGGCCGCGGTGTGAAGCGCTTGAAGTCCTCCTCCTCGTGCTTGGGCACCAGGCGCCAGTCGTGATACATCACCTTGTCCATCggcttctccttctcctctgtcTTTCCTGGAGGGAGATACAATGATCAGGGCGTCAACGGCAAAGACGCAGACGTCCCCGTGGCCTCCAGGGGGCACCAGAGGCATCCGGACTGCTCTGCCTTCAGGAATAAACCCTGTGTGGCCGGCAGGGGGACCTGGACTCGGATATTGTTCTGTTTCTCTAGCTGGAATCTACAAGCCACTGCGGTTCAGCATTTCTGATGACAAGTTCAGTGACCTCAGCCGGGCAGGAGATAAACCACCTCTGTGGAAATGAATCAACCAAGACGAGCCCTTACCTTTGAAGGTCAGGACTCCCCACGCTTTCCCATGGTCCAGG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU144208 True 920 lncRNA 0.56 2 5227980 5243187

Neighbor

gene id symbol gene type direction distance location
AMCG00018248 NA coding downstream 2305 5222887 ~ 5225675 (-)
AMCG00018246 nubp2,LOC102775692 coding downstream 15625 5206383 ~ 5212355 (-)
AMCG00018240 NA coding downstream 56461 5155372 ~ 5171519 (-)
AMCG00018239 NA coding downstream 72806 5149900 ~ 5155174 (-)
AMCG00018232 NA coding downstream 401967 4823825 ~ 4826013 (-)
AMCG00018245 NA coding upstream 36167 5279354 ~ 5283933 (-)
AMCG00018253 NA coding upstream 67970 5311157 ~ 5322315 (-)
AMCG00018252 dhrs7b coding upstream 89054 5332241 ~ 5342984 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 106451 5349638 ~ 5354923 (-)
AMCG00018258 NA coding upstream 365403 5608590 ~ 5612475 (-)
G115144 NA non-coding downstream 24107 5153052 ~ 5203873 (-)
G115100 NA non-coding downstream 169394 5036731 ~ 5058586 (-)
G115071 NA non-coding downstream 406569 4820965 ~ 4821411 (-)
G115037 NA non-coding downstream 548231 4679540 ~ 4679749 (-)
G115021 NA non-coding downstream 637912 4589295 ~ 4590068 (-)
G115170 NA non-coding upstream 35899 5279086 ~ 5279296 (-)
G115172 NA non-coding upstream 40887 5284074 ~ 5284333 (-)
G115173 NA non-coding upstream 41758 5284945 ~ 5285516 (-)
G115176 NA non-coding upstream 48836 5292023 ~ 5292259 (-)
G115177 NA non-coding upstream 50492 5293679 ~ 5293933 (-)
AMCG00018220 NA other downstream 576339 4646147 ~ 4651641 (-)
G115020 NA other downstream 639683 4586062 ~ 4588297 (-)
G114838 NA other downstream 1140949 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2580169 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2618501 2609145 ~ 2609479 (-)
G115174 NA other upstream 43199 5286386 ~ 5287873 (-)
G115183 NA other upstream 56920 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 113659 5356846 ~ 5366754 (-)
G115320 NA other upstream 707234 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1367446 6610633 ~ 6652773 (-)

Expression


Co-expression Network