G115160


Basic Information

Item Value
gene id G115160
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5231618 ~ 5233417 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144211
AAACAAGCATGTCAGTTTATTCTAAGTGATTCAGACAcagaaaagacacacacactgtgacttCGAATGcttgtctttatttgtatatttttggtCACAAGACATTGACTTTCCCCGTGTTCACCATACAAAACCAAGAACTAGAACATGGACTGTACCATTAATTTGGTATTAAGGCCTTTGCCATCATCAAGTATGGGGATATACATTCCACTGTGTAGACTCTGACCATAGTTGTtgcacagacaaacaaaagggAGCGGGAACTTGAATCGGGAAACTAAGCAATGTGGTTTCATACCAGACCAACACTTCCGTGTATAACCAATAAGTGGAAAGAAAATCCCTATCAGTGGACAAGTAACAGTGTTTTCAGAGTTAAAAAGTAATTGTCTACAGTGGGAAGAACTAGCTGCACTTGCAATTAACAATACTATCAgcttaaattacattacaaccTAATTGAAagctattattttacagaacTGTGAATTCAATACAAACAGGTAGGGGCTGGATTAATCAACGCTTCCAGCTCTCTGCCAATTGCAAACTCCAGACACAGGCCTCGCTCTGTCATTGGTGAGATGCAAGAAGCCTTTGTCAAAGAACCCTCCCACCCGGCGTCCTGGAGGGTGGAGTCCGTCCTGCTTTAATTTAAAcccgtgtctgtctgtctgtctgtctgtctgtctgtctttattaacgttgtatgtttttgtaacaTTCACCCTGAAgctgtaaacaaatgtaaactctCCGGCTCCGGTCGTGTCAGTGGCTTTTCAGTCTTTAATTTTGGAAGGAcggaaattactttttaaaattctaGAACATATTTAAATCCAGGGGGAGGGCgttcctttaatttgttttaaacgaGAGGTATCCCAGCAGTGACTCACTTGGTCATATCTGTTCTGGGGTGGGAACGTCAGTCAGAGGAGATATGTCCCTAAAAAGGCAGTtgttaatctttaaaataaccccCCCCTCTCCCATTATAGGAAGTTGAAATGACTCATTTTCATGAATCAACAAGACTAGTGTTAAATAGTACCTCATAGTTTTTAACTACTGGACTTTAATTAGGTCCGTATTCCCACATGCAGAAACCCTGATCTACAGCCTAACGGTTCGGTCAGACCTGATAATTCAGCAAGGAAAACGGATCGGAGTTGTGCTTTTACTGTAAATTATGAttcccataaaaataaaacctcggTAcggatttaaaaacaatcaatagaCAAAGACAGAATGAATCCACTGCTCTTTAAATAGATACAAGATCCCTCTAAGGATAGcaaaacttaataaataaaataaaacctgctcGTCGCTAGTGTGACACGAGCCAATAACTACTGGattgagaaaaactaaaaatcagaCCCTTGGGTCCCGAGATCAGGCTCGATTATAAGGTCGCCCTGTCAGCATGCTGCAGGACTGATCTGAAGAAAAGCttataaaagaaaattataaaaacacgGAGGGAAATCTTTCGTGTTAAAAAGGAGTTTACAATTCTGGAGATATGTAAGCTGGCCGCTCGGCCTGGATGCGAgagtgcaggtgtgtgtgtgtgtgcgtgtgcgtgtgtgagggAGACCTGCAGGCCGGTGTGGGGGGGCGGTGTGTCCGCCTCACTCGTACACCCAGCGCTCGGTGCAGTCCTCCCAGCAGTGCAGCTCCTGCGGTCTGAACCACAGGGAGATCTCTCTCTGCGCGCTCTGGGTCGAGTCGCTGCCGTGGATCACATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144211 True 1767 lncRNA 0.43 2 5231618 5233417

Neighbor

gene id symbol gene type direction distance location
AMCG00018248 NA coding downstream 5943 5222887 ~ 5225675 (-)
AMCG00018246 nubp2,LOC102775692 coding downstream 19263 5206383 ~ 5212355 (-)
AMCG00018240 NA coding downstream 60099 5155372 ~ 5171519 (-)
AMCG00018239 NA coding downstream 76444 5149900 ~ 5155174 (-)
AMCG00018232 NA coding downstream 405605 4823825 ~ 4826013 (-)
AMCG00018247 NA coding upstream 203 5233620 ~ 5269405 (-)
AMCG00018245 NA coding upstream 45937 5279354 ~ 5283933 (-)
AMCG00018253 NA coding upstream 77740 5311157 ~ 5322315 (-)
AMCG00018252 dhrs7b coding upstream 98824 5332241 ~ 5342984 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 116221 5349638 ~ 5354923 (-)
G115144 NA non-coding downstream 27745 5153052 ~ 5203873 (-)
G115100 NA non-coding downstream 173032 5036731 ~ 5058586 (-)
G115071 NA non-coding downstream 410207 4820965 ~ 4821411 (-)
G115037 NA non-coding downstream 551869 4679540 ~ 4679749 (-)
G115021 NA non-coding downstream 641550 4589295 ~ 4590068 (-)
G115170 NA non-coding upstream 45669 5279086 ~ 5279296 (-)
G115172 NA non-coding upstream 50657 5284074 ~ 5284333 (-)
G115173 NA non-coding upstream 51528 5284945 ~ 5285516 (-)
G115176 NA non-coding upstream 58606 5292023 ~ 5292259 (-)
G115177 NA non-coding upstream 60262 5293679 ~ 5293933 (-)
AMCG00018220 NA other downstream 579977 4646147 ~ 4651641 (-)
G115020 NA other downstream 643321 4586062 ~ 4588297 (-)
G114838 NA other downstream 1144587 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2583807 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2622139 2609145 ~ 2609479 (-)
G115174 NA other upstream 52969 5286386 ~ 5287873 (-)
G115183 NA other upstream 66690 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 123429 5356846 ~ 5366754 (-)
G115320 NA other upstream 717004 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1377216 6610633 ~ 6652773 (-)

Expression


Co-expression Network