G115170


Basic Information

Item Value
gene id G115170
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5279086 ~ 5279296 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144238
ATTATATTGGGTGTGCATCTGTTAAAGGTAGAATCATGGTTCGCTGTAGGTTTTGGCATAGAATAGTGTCCCTACCTATgcctttaatttatattattgacAGAGGAGGGGGGATCTACCCCAAACTGTGTACCTCTTACTTAACCAAAGTCCATATTTGTTCTAGAACCAGAGGAAGTTTGGGGGGGATGATCCTAGTGTTTCTTACAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144238 True 211 lncRNA 0.40 1 5279086 5279296

Neighbor

gene id symbol gene type direction distance location
AMCG00018247 NA coding downstream 9681 5233620 ~ 5269405 (-)
AMCG00018248 NA coding downstream 53411 5222887 ~ 5225675 (-)
AMCG00018246 nubp2,LOC102775692 coding downstream 66731 5206383 ~ 5212355 (-)
AMCG00018240 NA coding downstream 107567 5155372 ~ 5171519 (-)
AMCG00018239 NA coding downstream 123912 5149900 ~ 5155174 (-)
AMCG00018245 NA coding upstream 58 5279354 ~ 5283933 (-)
AMCG00018253 NA coding upstream 31861 5311157 ~ 5322315 (-)
AMCG00018252 dhrs7b coding upstream 52945 5332241 ~ 5342984 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 70342 5349638 ~ 5354923 (-)
AMCG00018258 NA coding upstream 329294 5608590 ~ 5612475 (-)
G115157 NA non-coding downstream 35899 5227980 ~ 5243187 (-)
G115160 NA non-coding downstream 45669 5231618 ~ 5233417 (-)
G115144 NA non-coding downstream 75213 5153052 ~ 5203873 (-)
G115100 NA non-coding downstream 220500 5036731 ~ 5058586 (-)
G115071 NA non-coding downstream 457675 4820965 ~ 4821411 (-)
G115172 NA non-coding upstream 4778 5284074 ~ 5284333 (-)
G115173 NA non-coding upstream 5649 5284945 ~ 5285516 (-)
G115176 NA non-coding upstream 12727 5292023 ~ 5292259 (-)
G115177 NA non-coding upstream 14383 5293679 ~ 5293933 (-)
G115179 NA non-coding upstream 17618 5296914 ~ 5297182 (-)
AMCG00018220 NA other downstream 627445 4646147 ~ 4651641 (-)
G115020 NA other downstream 690789 4586062 ~ 4588297 (-)
G114838 NA other downstream 1192055 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2631275 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2669607 2609145 ~ 2609479 (-)
G115174 NA other upstream 7090 5286386 ~ 5287873 (-)
G115183 NA other upstream 20811 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 77550 5356846 ~ 5366754 (-)
G115320 NA other upstream 671125 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1331337 6610633 ~ 6652773 (-)

Expression


Co-expression Network