G115172



Basic Information


Item Value
gene id G115172
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5284074 ~ 5284333 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU144240
GCGTACAAGCAGCTATAGCGTATGGGTTTCTAacagtaaaatgtgttaatatacCTGCTTCACCGATGTGCACAGCTACACTGCAGATCAAACCCTCGTTGTATGTTAAATAGCAAAAATGTGCATTCGCATGTTATAAACGACTGTTAATTTTCCGATCGAGCAACAGGGAGACTGACACAGACATCGACCAATCAGAGAGGGGTATAAACCAGCATAACGGGATATGCTGTCGATGCTCCAATAGCATTAGACACCGG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU144240 True 260 lncRNA 0.43 1 5284074 5284333

Neighbor


gene id symbol gene type direction distance location
AMCG00018245 NA coding downstream 141 5279354 ~ 5283933 (-)
AMCG00018247 NA coding downstream 14669 5233620 ~ 5269405 (-)
AMCG00018248 NA coding downstream 58399 5222887 ~ 5225675 (-)
AMCG00018246 nubp2,LOC102775692 coding downstream 71719 5206383 ~ 5212355 (-)
AMCG00018240 NA coding downstream 112555 5155372 ~ 5171519 (-)
AMCG00018253 NA coding upstream 26824 5311157 ~ 5322315 (-)
AMCG00018252 dhrs7b coding upstream 47908 5332241 ~ 5342984 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 65305 5349638 ~ 5354923 (-)
AMCG00018258 NA coding upstream 324257 5608590 ~ 5612475 (-)
AMCG00018262 cops3 coding upstream 456696 5741029 ~ 5745704 (-)
G115170 NA non-coding downstream 4778 5279086 ~ 5279296 (-)
G115157 NA non-coding downstream 40887 5227980 ~ 5243187 (-)
G115160 NA non-coding downstream 50657 5231618 ~ 5233417 (-)
G115144 NA non-coding downstream 80201 5153052 ~ 5203873 (-)
G115100 NA non-coding downstream 225488 5036731 ~ 5058586 (-)
G115173 NA non-coding upstream 612 5284945 ~ 5285516 (-)
G115176 NA non-coding upstream 7690 5292023 ~ 5292259 (-)
G115177 NA non-coding upstream 9346 5293679 ~ 5293933 (-)
G115179 NA non-coding upstream 12581 5296914 ~ 5297182 (-)
G115180 NA non-coding upstream 13099 5297432 ~ 5298505 (-)
AMCG00018220 NA other downstream 632433 4646147 ~ 4651641 (-)
G115020 NA other downstream 695777 4586062 ~ 4588297 (-)
G114838 NA other downstream 1197043 4028016 ~ 4087031 (-)
AMCG00018142 NA other downstream 2636263 2636501 ~ 2647811 (-)
G114549 LOC104962440 other downstream 2674595 2609145 ~ 2609479 (-)
G115174 NA other upstream 2053 5286386 ~ 5287873 (-)
G115183 NA other upstream 15774 5300107 ~ 5304429 (-)
AMCG00018251 natd1,LOC107745813 other upstream 72513 5356846 ~ 5366754 (-)
G115320 NA other upstream 666088 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1326300 6610633 ~ 6652773 (-)

Expression



Co-expression Network