G115201


Basic Information

Item Value
gene id G115201
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5344487 ~ 5344947 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144281
AGCGCTCTGCCAACGGTGCGAGGAAGCTGCCCGGTTTCAAACCCTTTGAAATCACTCGTCTACTACTTCTTCAGACTCGAAGCAGAATGTGGCAACAGCTAGGGTAACGTAACGGCTCGTGGCTCCAGTTGTACTTGTTTATTGGGGGGAGAGGCGTTGCAGGGAGATACACGTAGAGTCCAAGATAGAGAGAGTAATGGGAAAAGTTTATTAAATGcctttgcagaaaatgtatgtttaaccATATGAAAAGGAAATGAGATTGAAAAGTGTCTGGATCACATCACAAAGTCAAACAAGGTATGGTTTACATTTTGGGTGGGGAAAATGATTGTTTTAGCTGTTGAACCAAGTGATGCATTGAATGTGGTCTCGTGATTCTGTACAGAAAAACTTCCCTGTGCAAATAAAGCAATTTAGCAACACTAAACTCCAGGTGCTTCCCATGCGGTTGTGTcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144281 True 461 lncRNA 0.43 1 5344487 5344947

Neighbor

gene id symbol gene type direction distance location
AMCG00018249 NA coding upstream 40034 5286386 ~ 5304453 (+)
AMCG00018241 mfsd1,LOC107667128,LOC100697574,LOC107752991,LOC101471794,LOC107085018,LOC108237128,LOC105030909 coding upstream 65562 5271199 ~ 5278925 (+)
AMCG00018244 nme3 coding upstream 111130 5227386 ~ 5233357 (+)
AMCG00018243 spsb3,LOC101158278,LOC106600674 coding upstream 122002 5213135 ~ 5222485 (+)
AMCG00018242 atp6v0c,LOC107552490,LOC106516477,LOC106517404,LOC107376678 coding upstream 139623 5193217 ~ 5204864 (+)
AMCG00018254 LOC108274084,LOC107090247 coding downstream 36104 5381051 ~ 5392482 (+)
AMCG00018255 LOC106933195,LOC107091042,LOC103143274,LOC106958689,LOC108237146,LOC107388092,LOC103481993 coding downstream 182339 5527286 ~ 5528572 (+)
AMCG00018257 LOC108274018,LOC108413479,LOC107602438,LOC108437874,LOC107719913 coding downstream 246900 5591847 ~ 5604149 (+)
AMCG00018256 LOC101067528 coding downstream 278098 5623045 ~ 5633788 (+)
AMCG00018259 NA coding downstream 343358 5688305 ~ 5738824 (+)
G115188 NA non-coding upstream 26562 5316453 ~ 5317925 (+)
G115099 NA non-coding upstream 243549 5095148 ~ 5100938 (+)
G115061 NA non-coding upstream 530068 4814018 ~ 4814419 (+)
G114985 NA non-coding upstream 750642 4593460 ~ 4593845 (+)
G114984 NA non-coding upstream 754413 4589295 ~ 4590074 (+)
G115331 LOC100136012 non-coding downstream 701083 6046030 ~ 6046534 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding downstream 1180772 6525719 ~ 6588409 (+)
G115419 NA non-coding downstream 1273231 6618178 ~ 6620097 (+)
G115439 NA non-coding downstream 1309175 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding downstream 1313586 6658533 ~ 6667223 (+)
G115049 NA other upstream 580582 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 740382 4594933 ~ 4604105 (+)
AMCG00018196 NA other upstream 1151157 4186410 ~ 4193330 (+)
G114551 NA other upstream 2696713 2640846 ~ 2647774 (+)
G114518 NA other upstream 2775549 2491313 ~ 2568938 (+)
G115299 NA other downstream 604516 5949463 ~ 5951017 (+)
AMCG00018272 NA other downstream 810541 6155488 ~ 6160616 (+)
AMCG00018280 NA other downstream 1365535 6710482 ~ 6747438 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2548680 7893627 ~ 7894449 (+)
G115648 NA other downstream 2774831 8119778 ~ 8122171 (+)

Expression


Co-expression Network