G115219


Basic Information

Item Value
gene id G115219
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 5345762 ~ 5349630 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144306
AAGCTGCTCCCGGTGTGCTTTGAAAGAGTGGTGCTCTGGACCTGAATCTGTGTACCAAATATCACCTTTTCTTACAAGTAGCCACTTAACTGTaagctttatttttctatatattgtAGAATATCTGCTAAGATACTGTACATACGTTTCCTACTCCTTATTTCTTTAAACCGAAGAATAAGATGGAACAAACCTagtgccaaaataaatattataaatgtattttactgttgcatcaaatgcatcattttggaaaaaaaaaaaatatttaaaaacatgcaacttAGGAATTAAATGCAAGGAGAAATTGGACCTCTGAGAGAATCCTTATCCCGAGTCTTGAGACTTTGTCGACAATGTTGAGGTCACTGTTCATGTGAGAGTATTTGAACGTCTTGTATGTTGAGCAATAGGGAATGGACTAGAAGCCAATACCAATGATATCTCTCCCATCTCCCACCACAAACACTTATTGacttctgtgtttttcaggaaACCTCattaagaagagaaaaacaacaccgAGGTAAAATGACtaattcagatatttaattaGTGCTGTCTAATGCTATGGccactaaacaaaacaacaaaaggctTCATATTTCAATTGGGAGAttgagaaattgtattttgtataacaaGGCCAAATCATATCAGAATATTTCATGAAATCCTGAGTCTTGTCCTTCCCTGCCTTGCCTTTCCTCGGTGGTGCTTCCacaccagaaaaacaaactgtcaGGTGACAGGCCAGGGGCCTTCAGGAGGGAATTGGATTGCTCATATCCTCTCAAGCCCCTGGCTCAATAACTATCCTAGTTTCCCTACATAAACAACATCTCCCAGAAATGTGGTGTCGAGTGGCCATCTCACCAACCCTGTGACACCCCACATAGGATCTGTGTCTGAAAGATCTATGGCTGGGGAGGGTGTTtcctgattaaattaatttaggctGCTTTGTTCTCAAATCTATACATAGACGTATATTTATCTGAGCAGACAAATATTGGTTATTTGATCATGTATCAGTGATTACCCTATCAAAACAATAATAGCACTGCCTCCTTGGAGGCACATTTTCTTCGTATTAATATTTGTGCGTCGGGTCATATTTAGCGTATTAGTTCCCTGGATGCAAGGTGCTGTGTTGGGCAGCTATCACACCTGAGAAACGGCTTCTGCATCGCTTTAGACTACCATAGCCGGTGTCTAACTTGTGTGACACTAAATACGGGTTATCTTCCTGGGGAGACCAAAGCTACTTATTAAGCTAGGGCTCTGGAAGGAGGCAAATAAGAAATAGTCCCTCTCATTTCGTCCATCACTTGTTAATGTGAGGACAGACGATATGCTAATGCAAAGGATCTAATGATTTGCTTGCTTAAAAAAcagtacattgttttattaaatgttccaTTCTCTCCTTATCAAggactctcactctcacacaccaGGATGTTGTCAGCAGACACATAACTGGGATTgggatacataaatatatacgtGTGAAGAGATTTCAGTGTAGCTGATTTAGACTTGATTTTCCTCTCTTGTTCTGAATGGTTTCCCTGTCAGTTCACTGTGGCAGTTACTGCAGCGTCACCAAGGGACATGTTTAGATAGGATTGACATGGTAAATTCAGGTTTCCTGAAGAAATGAATGCTGTCAAttgtatagatttgttttcctccttaaATGGCAACTggaagtattaaaaaaaaaaaaacatttgcttattAAAGTAGTTGTAATCTTTTGTCAGCCAGGTGGGAGTGTTTGGTTGCAATGCTTGTGCTGCTGCCCCTTTTTACCTTCCCTTCCACAGTTCATTCTCctcaacttaaaaataataatatatttaggTTATTATAGCGCTAAACATTCCCACATGTAGCTGAGCTGTTTAAGTAACATCTGTCCAGTGCCACAGTAAACGACAGACAGCTGAAGTCTTCCTGTCTGTTTTCAGTGTAATTTCTGGTGCATTGTCTGTCACTCCCCTCAgttgactctctctctctctctctctctctctatatatatatatatatatatatatatatatacagctctggaaaaaactgcggccacttaacattgatttctgaacttagagtggtctcatttttttttccagagctgtatatatatacatgagcCTCAGCCTTTTGACCTCTTCTTCCAAAAGAACAATTGAtataaatttaattttttttttctgaaatacaaaaGCACTTTGATGAATGACTATTCTTAGTCCCTGGACTAGTAGTGGCAATAACCCGTGCCGCCCTTGGGAACAGACAATGCAAAGCACTTCCTGTCGAGTCGGCAGCGTGGCGGGGGGGATCGCCCGGCCCCCCGCAGTGACAGCGCAGTCCATCAGAGCAGACGCTGAGAAGGGAGTGTGACGCACTTCAGCCTttcacagatttgtattttttgtcgGAAGGTTaactatgaaaagaaaaaggtgtgTTACTGAAACAGCTCAAGCAGCGCATGCAGGAGGCCTAATTATATTTTCCTGATCATGTGATTACTGGCAGGACCGGTGACCTCATTGTCTTGATTCTGAAGACACTTGGTTATGTTCGTTTCATTACCCGAGAAACTCGTATAATAGCCTTTTCTGGAGTCTAAAAAAAACTACTTACAAATCTAACCTTTGTGCTCTCAGGCTTTTGTAAATCgcacaaatatttacattaatttatatatataatatatacacccAAATATGTTTTATAGCTTATTATATGCCTTAGTTTATAGGAAACTGTACCTATAATCCCATCCTTTCCTCTTGTGTGTGCATACTGTGTAACTCTCGCAACCCAGTGGAATCATATGTAGTTTTAGTGTAATTGTGAACAGAACGATTAAGTAATAGATCAAATTCACCCAGAGTATATTTTTGCAGCAGAATATGACAACAGTCCTGTGCAGCtgtgtttgtagtgtttttttaatccgtATCCCTTCGAGGGGAGAAAACATCATACGGTCCacagcctttttcttttcctgtgtgGTAGTTGCCCTTTGAAAAGCCTTTGCTGCTGCAGGACTCTTTTAATGACTTTCTAGTAACACCAGCACTAAATCCACCGAATCAGGTAAACCGGTCATTAATGATGCAGCTTACTCTCCAGTTTCATCCATAGCCTGTACTTTTTACGGCTAGTTTTCTGCATCACAATCTCCAGCATTTAGCAGTGCACTCTGAAGATTGTGATCAGGAAATTAAAGGATCATGGACCGTATGTTTGACCTCTTCGAAGAATGAACATCTAAATCAGACCTGGGTTTTGTAACTTCAGGACTGCTGACATTTTCAGACGTGCGAACAGGTGTTTCTCCTTTTCACCACAGGAAGGCCAGTCTCGTCTAAAATTGAAGCCTGAATCGGGCACAGCGTCAGGGAATCCAATGTGAAATCGTTTCAGGAGAAGGAGAAAAGGCAGATTAGGAGCTCTAGGAGTAAAAGGAATTTCGCTCAACCACTTTTCTATTGATGTGCTTATTACATGAAACCTGTCCAAGCACAGCGGCCCGGGGTCCTTGTCTCTCGCTCTTGGTTTgttctttcagtttctttaaagGGAAGGATATGCATTgatctttattttctcctcGGTTGCTATTTGTGTCTTTGCGTTTCAAAGGACATAAACATCACCTGACCAGACTCTACATTTGAATGTGTGACAATTTAGTGGTATTgaacactgcaataaatattCTTTATCTCGACATTCATTTCCcttgtctgtttgtctctgcTGGTGTGTTTCTTTGCTTCATGCATTTCACTTCGTCAGAATATCAAAATACCTCCGCGTTTCAATtgaagtaaaaa
>TU144307
ttttttttctgaaatacaaaaGCACTTTGATGAATGACTATTCTTAGTCCCTGGACTAGTAGTGGCAATAACCCGTGCCGCCCTTGGGAACAGACAATGCAAAGCACTTCCTGTCGAGTCGGCAGCGTGGCGGGGGGGATCGCCCGGCCCCCCGCAGTGACAGCGCAGTCCATCAGAGCAGACGCTGAGAAGGGAGTGTGACGCACTTCAGCCTttcacagatttgtattttttgtcgGAAGGTTaactatgaaaagaaaaaggtgtgTTACTGAAACAGCTCAAGCAGCGCATGCAGGAGGCCTAATTATATTTTCCTGATCATGTGATTACTGGCAGGACCGGTGACCTCATTGTCTTGATTCTGAAGACACTTGGTTATGTTCGTTTCATTACCCGAGAAACTCGTATAATAGCCTTTTCTGGAGTCTAAAAAAAACTACTTACAAATCTAACCTTTGTGCTCTCAGGCTTTTGTAAATCgcacaaatatttacattaatttatatatataatatatacacccAAATATGTTTTATAGCTTATTATATGCCTTAGTTTATAGGAAACTGTACCTATAATCCCATCCTTTCCTCTTGTGTGTGCATACTGTGTAACTCTCGCAACCCAGTGGAATCATATGTAGTTTTAGTGTAATTGTGAACAGAACGATTAAGTAATAGATCAAATTCACCCAGAGTATATTTTTGCAGCAGAATATGACAACAGTCCTGTGCAGCtgtgtttgtagtgtttttttaatccgtATCCCTTCGAGGGGAGAAAACATCATACGGTCCacagcctttttcttttcctgtgtgGTAGTTGCCCTTTGAAAAGCCTTTGCTGCTGCAGGACTCTTTTAATGACTTTCTAGTAACACCAGCACTAAATCCACCGAATCAGGTAAACCGGTCATTAATGATGCAGCTTACTCTCCAGTTTCATCCATAGCCTGTACTTTTTACGGCTAGTTTTCTGCATCACAATCTCCAGCATTTAGCAGTGCACTCTGAAGATTGTGATCAGGAAATTAAAGGATCATGGACCGTATGTTTGACCTCTTCGAAGAATGAACATCTAAATCAGACCTGGGTTTTGTAACTTCAGGACTGCTGACATTTTCAGACGTGCGAACAGGTGTTTCTCCTTTTCACCACAGGAAGGCCAGTCTCGTCTAAAATTGAAGCCTGAATCGGGCACAGCGTCAGGGAATCCAATGTGAAATCGTTTCAGGAGAAGGAGAAAAGGCAGATTAGGAGCTCTAGGAGTAAAAGGAATTTCGCTCAACCACTTTTCTATTGATGTGCTTATTACATGAAACCTGTCCAAGCACAGCGGCCCGGGGTCCTTGTCTCTCGCTCTTGGTTTgttctttcagtttctttaaagGGAAGGATATGCATTgatctttattttctcctcGGTTGCTATTTGTGTCTTTGCGTTTCAAAGGACATAAACATCACCTGACCAGACTCTACATTTGAATGTGTGACAATTTAGTGGTATTgaac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU144306 True 3869 lncRNA 0.40 1 5345762 5349630
TU144307 False 1520 lncRNA 0.42 1 5345894 5347413

Neighbor

gene id symbol gene type direction distance location
AMCG00018252 dhrs7b coding downstream 2778 5332241 ~ 5342984 (-)
AMCG00018253 NA coding downstream 23447 5311157 ~ 5322315 (-)
AMCG00018245 NA coding downstream 61829 5279354 ~ 5283933 (-)
AMCG00018247 NA coding downstream 76357 5233620 ~ 5269405 (-)
AMCG00018248 NA coding downstream 120087 5222887 ~ 5225675 (-)
AMCG00018250 tmem11,LOC106600685 coding upstream 8 5349638 ~ 5354923 (-)
AMCG00018258 NA coding upstream 258960 5608590 ~ 5612475 (-)
AMCG00018262 cops3 coding upstream 391399 5741029 ~ 5745704 (-)
AMCG00018264 rasd1,LOC107653935,LOC107720458 coding upstream 433446 5783076 ~ 5784900 (-)
AMCG00018265 NA coding upstream 444887 5794517 ~ 5808843 (-)
G115202 NA non-coding downstream 628 5344487 ~ 5345134 (-)
G115182 NA non-coding downstream 46259 5299014 ~ 5299503 (-)
G115181 NA non-coding downstream 46905 5298641 ~ 5298857 (-)
G115180 NA non-coding downstream 47257 5297432 ~ 5298505 (-)
G115179 NA non-coding downstream 48580 5296914 ~ 5297182 (-)
G115243 NA non-coding upstream 258203 5607833 ~ 5608069 (-)
G115277 NA non-coding upstream 397828 5747458 ~ 5748359 (-)
G115278 NA non-coding upstream 400153 5749783 ~ 5750043 (-)
G115279 NA non-coding upstream 400462 5750092 ~ 5754022 (-)
G115332 LOC100136012 non-coding upstream 696400 6046030 ~ 6046618 (-)
G115183 NA other downstream 41333 5300107 ~ 5304429 (-)
G115174 NA other downstream 57889 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 694121 4646147 ~ 4651641 (-)
G115020 NA other downstream 757465 4586062 ~ 4588297 (-)
G114838 NA other downstream 1258731 4028016 ~ 4087031 (-)
AMCG00018251 natd1,LOC107745813 other upstream 7216 5356846 ~ 5366754 (-)
G115320 NA other upstream 600791 5950421 ~ 5951055 (-)
AMCG00018291 NA other upstream 1261003 6610633 ~ 6652773 (-)
G115581 NA other upstream 2393588 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 3292266 8641896 ~ 8648807 (-)

Expression


Co-expression Network