G115395


Basic Information

Item Value
gene id G115395
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6217528 ~ 6219216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144532
TAAGatttcaaagttgttttttaatgtaaaaatacatttcattggaTCCACATACATGTCGAACCCTTGGCAGGATTCGGTGTCAAGCTCTGCTGGAAACACTGGAAAAATGCAGATCTATATCCGTTTAAGACCCAAAGCATGAAAAGCTGCCACGGTGTTTTTAAAAGCCCTTCAGTATTTaccaacacaaaacattttaatttgtatacattaaggtaaaaagaaaaatcaagcaAATTGTAATAACactttgtgaagaaaaaaaatctaaattaatgcaaaaaagcctatctataaaataaatacagcttcaGTTACTTTGGCATCTTCAATTCAAAATTGTGGTTTTTACCTTCCTAAGGACTAAAACCATTTATATAGATGGacctacacacacaaaagaaatcCAATCTGATTCCCAACTATCTACTTCAAATTACCCTTATACTAATGTataacttcatttaaaaaaaaaaaacaCAGATCTCTGGATCAAAATTCTGCACACTGAACATAaaagttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcactgtGTAGAGTAATACATTAGGTGAAAAATATTCACATGAATGAAGCGCGTTTAACAAGAACACAGGGCTCTCCTTTTAGATGTGTTCTGGCTCCAGTAGGCTTCAGTTTGGAGCTTAATGACAATCCATCTAAGATACCTCGTTGAATTTCTTTTTGGCTTCGCATAGGTGTACAAAATAGTGTTCACGGCCGGCCTTAGTGGGTTGACTGAAAACGCCTATGTATGAAgttttccactttttaattttgcaatgaaataatttaatgttcattttcaaGTAAAACGTAGTGCCCTGCAGATGTGGCTGCATCATATTGTACTTTGATCTGGCTTCTAATAAAGCTTAGGTCAGTGAAACTCTTAAACCAAAATGCAACATTTCCCAATTGTACTAACGCTGCCCGATTCACATGTCAAAGGATAATCGTAAAATAGGGTGGTGACAGTGTAACCAAAAAGCAATTTCACAACTTGGAAATGTTAAATGGAAGGCTTCTCAACTTTATAGCTGTCTAGTGGTTAAAGCAATAAATGGATGTCTTGAGGGCAAGTCTAATACCAAAACGTTTTGTGGATGTCTTgcagttattttagttttcaagtCTGCACATCCGATCAGTACTCCAGCTATTAAGCCTTTTAATCACAGCATATATGGCTTCACCAAGAATAGGGttaaagtttatatattttaaaatggtacaaAAGGGTTAAACTTCTATATAATACAATTCCTAGTTTTATATAGGTTTCCAGTATGCTACTGTTAATATATTGTTGCAATCTTAGTAATATTTTGTCATTGTATTTtcactatacatttaaaaaagaattatatacaaaatgtattcctttgACTTGCGGGTGGCAGTTGGTTATTCTTGCGGAACAGGGGTCACCGTCCTTCATTTGCGCTTCCTCAGAACTAGATACATCAAGCCGCTGAGCAGGGTCAGGGGAAACGCAATCCAAGCTAGAACGAAGGAGGACCCAAAGTCGCCGTCTTTCAAACTCCCTGGATGAAAGCTCTTGTGCTCGGCGGTGTAAATCGAAGCTGCAATCATTACGCaaagagctggagaggagagacaagGACAGATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144532 True 1666 lncRNA 0.35 2 6217528 6219216

Neighbor

gene id symbol gene type direction distance location
AMCG00018292 nubp1,LOC107690260,LOC107590599 coding downstream 34716 6158280 ~ 6182812 (-)
AMCG00018289 NA coding downstream 61737 6128713 ~ 6155791 (-)
AMCG00018274 clec16a coding downstream 92696 6068303 ~ 6124832 (-)
AMCG00018263 NA coding downstream 331528 5881546 ~ 5886000 (-)
AMCG00018265 NA coding downstream 408685 5794517 ~ 5808843 (-)
AMCG00018286 NA coding upstream 757 6219973 ~ 6231007 (-)
AMCG00018293 grin2a,LOC107685916,LOC107690256,LOC107568390 coding upstream 90153 6309369 ~ 6464857 (-)
AMCG00018283 c2h16orf72,zgc:77849,LOC105900007,LOC107590581,LOC107738628,LOC107685917 coding upstream 365760 6584976 ~ 6593102 (-)
AMCG00018284 arhgdib,LOC108432841,LOC107590585,LOC107685923,LOC107568023,LOC106601960 coding upstream 434673 6653889 ~ 6675207 (-)
AMCG00018287 NA coding upstream 497668 6716884 ~ 6729381 (-)
G115332 LOC100136012 non-coding downstream 170910 6046030 ~ 6046618 (-)
G115279 NA non-coding downstream 463506 5750092 ~ 5754022 (-)
G115278 NA non-coding downstream 467485 5749783 ~ 5750043 (-)
G115277 NA non-coding downstream 469169 5747458 ~ 5748359 (-)
G115243 NA non-coding downstream 609459 5607833 ~ 5608069 (-)
G115534 NA non-coding upstream 782586 7001802 ~ 7002005 (-)
G115577 NA non-coding upstream 1514881 7734097 ~ 7734384 (-)
G115579 NA non-coding upstream 1522758 7741974 ~ 7742210 (-)
G115580 NA non-coding upstream 1523325 7742541 ~ 7742747 (-)
G115596 NA non-coding upstream 1623121 7842337 ~ 7842708 (-)
G115320 NA other downstream 266473 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 850774 5356846 ~ 5366754 (-)
G115183 NA other downstream 913099 5300107 ~ 5304429 (-)
G115174 NA other downstream 929655 5286386 ~ 5287873 (-)
AMCG00018220 NA other downstream 1565887 4646147 ~ 4651641 (-)
AMCG00018291 NA other upstream 391417 6610633 ~ 6652773 (-)
G115581 NA other upstream 1524002 7743218 ~ 7773892 (-)
AMCG00018344 NA other upstream 2422680 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 2447521 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 3020596 9239812 ~ 9258202 (-)

Expression


Co-expression Network