G115481


Basic Information

Item Value
gene id G115481
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6772432 ~ 6773263 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144635
ACAACTTGGGCAGGTTTGTCGCAAAGTCTGTGCAGATTGTGCGCAGACTCGGCAGGGTGTCCGTGTCGTGATCGCAGCCTCTGGTCTACATGTTTGCGGCAGGTTATACAGAAATGGCAACTACACTACGACTTGCGGCGAAGTACGCTCTCTCAGGGAGACTGGCACAGCTCAGGGGCAGCCTGCCAGGACATGGTCGAAGCGGGGGGCTTCACTCCGCATTGCCCTGCTCCGTGTCTAATCAGAGAAATGCCTCCACCACCTCTAAAATTCATGTGGAGTTGGACAGTAACACAGG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU144635 True 298 lncRNA 0.55 2 6772432 6773263

Neighbor

gene id symbol gene type direction distance location
AMCG00018281 NA coding upstream 39938 6731610 ~ 6732494 (+)
AMCG00018282 NA coding upstream 68301 6688637 ~ 6704131 (+)
AMCG00018279 usp7 coding upstream 154814 6599598 ~ 6617618 (+)
AMCG00018278 grin2a,LOC107690256,LOC107733867 coding upstream 407192 6339451 ~ 6365240 (+)
AMCG00018276 grin2a,LOC107685916,LOC108413991,LOC107690256 coding upstream 462589 6306395 ~ 6309843 (+)
AMCG00018295 NA coding downstream 11987 6785250 ~ 6790463 (+)
AMCG00018297 naa60 coding downstream 18791 6792054 ~ 6798225 (+)
AMCG00018296 carhsp1,LOC107733846,LOC107576530,LOC107590589 coding downstream 42171 6815434 ~ 6818771 (+)
AMCG00018294 NA coding downstream 54428 6827691 ~ 6828740 (+)
AMCG00018300 NA coding downstream 110672 6883935 ~ 6899668 (+)
G115439 NA non-coding upstream 94079 6654122 ~ 6678353 (+)
G115441 arhgdib,LOC106606251,LOC107685923,LOC107590585 non-coding upstream 105209 6658533 ~ 6667223 (+)
G115419 NA non-coding upstream 152335 6618178 ~ 6620097 (+)
G115379 c2h16orf72,LOC105900007,LOC107685917,LOC107590581 non-coding upstream 184023 6525719 ~ 6588409 (+)
G115331 LOC100136012 non-coding upstream 725898 6046030 ~ 6046534 (+)
G115511 NA non-coding downstream 55825 6829088 ~ 6833312 (+)
G115514 NA non-coding downstream 64443 6837706 ~ 6838861 (+)
G115535 NA non-coding downstream 312311 7085574 ~ 7086966 (+)
G115560 NA non-coding downstream 947344 7720607 ~ 7720964 (+)
G115585 NA non-coding downstream 1109942 7883205 ~ 7890901 (+)
AMCG00018280 NA other upstream 24994 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 611816 6155488 ~ 6160616 (+)
G115299 NA other upstream 821415 5949463 ~ 5951017 (+)
G115049 NA other upstream 2008527 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 2168327 4594933 ~ 4604105 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 1120364 7893627 ~ 7894449 (+)
G115648 NA other downstream 1346515 8119778 ~ 8122171 (+)
G115789 NA other downstream 1920101 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 2426394 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 2466548 9239811 ~ 9245234 (+)

Expression


Co-expression Network