G115581


Basic Information

Item Value
gene id G115581
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7743218 ~ 7773892 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144767
TCCAGTCAGAGCTCCAGGGGTATCACGTTTAATATGGGAAACTCTCTCGGAAATATTTGTTCTCAACTTGGTAGCAATGCTGTGTCTTCTGTGGTATATGTAAACATAttACAGGATCGGGCAACTGTACACCATCAGCAAACACAGCCACGAGGAGAGCGACAAAGGAGAGGGGGTGGAGGTGGTACGAAACGAGCCGCACATTGACCCGGCGCACGGGGAAGGCCAGTTCACGGAGAAGAGAGTTCACTTGTCCAGTAAGCTTCCAAGCTGGGCTCGTGCCGTGGTACCTCGGATATTCTACATCACAGAGAAAGCCTGGAATTACTATCCATATACAATTACAGAATATACGTGCTCTTTTTTGCCCAAATTCTCCATCCATATAGAGACAAAATATGAAGACAATTGTGGGGATAATGAAAACATTTTCAATGTGGACAAAAATAACTCGGACCCAGAGGTGTGCTTTCTGGATATTGCCTATGATGACATCCCGGATAGACATTACAAAAGCTCAGAGGATCTCCGGTGCTTTGCCTCGGTAAAAACGGGAAGAGGCCCTTTAAAAGAAGGCTGGAGAGAGAACACCAAGCCAGTGATGTGCTCTTACAAGCTAGTGGGAGTCAAGTTCGAGGTGTGGGGTCTGCAGACAAGGGTGGAGCAGTTTGTACATAAGGTCATCAGAGATATCTTGTTGGTGGGGCACCGGCAGGCCTTCGCTTGGGTGGATGAGTGGTACACCATGACTTTGGAGGACGTCCGTAAATTCGAGAATCAGATGCACGTGGCCACAAATCAAAAACTGGGATACCAAGAGACATAGCTGACACCCTGCCAATGTATGtcatcttttatttcattttaaagttcaTATTCATATCATGAATACAGTGAGTTACACTTTCTAATCTAATGAAAATGATAGTGTTAAAGGgacaattcattttaatgagacTTTTATCACAATGGTTCCATACAATAAAAAGAATGTCTAATGACTGATGAGCCATCAAAGCAAGCTTACATGCTTCTCAGTAATGTAATGTGAAACTTCAACAGTACAATATACCTACTTCCCAGTTGGAATATTGTTCAGTATATAGGCAGTCCACTATGCAACTTTTTAACTATTGTTTCTTGAACTGTTGTGGAAAATGTTGATGTTGATTGCTTTTATACCTTGTCTCATGTTTCACAGTATTAGAGGTGAACACTGGGCAATACTGCCATCTAATGGGGAAATATAGCacttattttttacttcaataTGCAGTTAAAACGTCAACCGTGCATTAATCCCATAGGTATATTACAGACCGCTGATGTTGGACTTTCGTTACCACCTTGAACAACATTTTGTGCTTCcgatatttgtattactgtgaAGTGATTTGTGCACgtcttgtttttttggttttgttttcagaattttttctgtgtgttttcttgaGGTGATTTGCCATTTTTTCTTTAGTGTTCAAACTAATCTGTCTCAGACTCGTCCCAGAGAGATGTGTTCGGTAAGTGTTTTGAATTCCTCTAAAGTATACAGGGAAATCCTGCACAGCCCTGATGTAACCCCCATGGTTTATCCTTCCTGACGTTCGCTCCTAATGTGCCAAAGGAGAACATGTCTGCCTTCGTTTTTCTTGTCCTTGTGATCGATGCATAACTAAGAACAGGTAACGGAGTATAAAATGCGAATATCCCCCTTTCAAGGACCATAACTGATGTCCTTTCCCACCCTCCACCAGATATGTCCATGGAAGAGGTCCGGGAGTACGAGAGAGAGACGCAAGAAGCCACCAATGAGAAAATTGGCCTGATGGCGCCCACCATCTCCATCCACGAGGTCGCCCAGCCACCCACCACACGCAGCGCCCCGGCCAGCGCACCTTCCACCCCTGTGAACGGAGACCCCCCGGACTTCCTCAGCGTTCCCAAGGATCGGCCCCGAAAGAAATCCGCCCCAGAGACACTCACCCTCCCTCAGCTGCGAGAACGCGCCCTTCCCAAATAGCATTCCCAAGACGGGAGAAACCTGGACTGAAGCGTTCCCTTTccggttttagtttattttctaatatatttcTAATACAGTACgtatgtgtacatgtatatatgcacatgtatacatatttatggagttaacaattaataaaacaagatttAAGCGTTGATCTAAtgataattttatttgtattattgtcctTGGCAAGGTCTGGAGTTCAGAGAAGACATTGCCAAAATGGCCCagatgtttctgtatttttctgccTCAATTAAGACGGCCATAAACGTTTAGTTAGGAGGAGGTAATTGCACATTGTGCCAGTAGAGTTTTTCGAATCCTACCCTTTACATACTCTGCAATGGACGCATTACACTGAGAACGCTCTTTCAGGTTCAGTCCGATTGCAGATGTAACATGCGTATTGAAATGCAGGGGAGCTGCTTTTATTCAGGTGTTTGTCTAAGATGATTGTTACGCAATTTGTTAATCAAAAGTGCTTTTGGAGGTTGGGGTAGGGTGCTGACATTGGTCTCGTTCCTTTGTGATTAGCAGGGATATTCCTCTGAAATTATAGCTCCTTGTAACTCATTAGCATATTCTTGGATGagactgttttaaatgtttaagaaaacaaatatctcCTAGGATTGTAGTCCAAAGACAATAGGAGGAAATGCCAATGGAAAGAATTGCAATATAGTGTATTTTAAAGGCCTTAAATGCAAGCCCTAAGGCAACGTCTTTTGTTggtgtaaaaatgaaatgtaggtGATGCATGATTTCTCTGGAACTTAATTCATACATTAAGTTCTGGtttcaaactaaatattataattgtctTTTGAAAAGACTGACTTAGATGCTAAACTGAAATGCATTCTGTTCACCTATAAtgaaaattataacaataatgaaatggCAATCTCTCCACTTTTATGTGGactacaatgttttattttaaaatgcacgtctttgggatttttttttgtaatctttgtATGCTTCTTGAATTTGCTAAATTGTTACTTTATTACCGAATAATGCGATTCAAATGTCATTTGAGCTGtaattttcatgtttaatgttttattcatttctaATGCATTGGGAAATCTGCTGGTTTCATTTCAGATGTATGCTGTACAGGCATTTTGTTTCTGCACTGTGTCATATGCGTTCCTGCTGTTCAATCTCCTAAATGAGAGAAATAACTAATGCACGTTCTATCCAACTAGATATTCCACTAGCTCAGAATTGTTCTGTCCAGTACTTAAATGcccagagggacagagacagagtgatGCCAATTTTATGAATCTACTTTCTCACCCCACCCTCCTGgatcagtttaaaaatatatataaatttccCCGGTTACAATAATTCCGTATGTACTATGATTAACTCATCCTACACAGTACACATGCAGCTTGGCCACCGACCGGACCGAACACTGCGTATTCCTGGACCCCCTGGGCAGCATAAGGGGCAAGTAGAGGAGATCGTTGCCAACTCTGAGGGCAGCTAATCCTGGTGATCCACCTATACTTTGGCCCGTTAAGATACCAGCTGTCTCTAAACTGCAAGAGCCAGTCTGTACTATTTAGTTGAGGCCTTGACTAGTTCATCCACCTTATTCTTGGATTTAGTTTTAGTATAGATCCCTATCCAATACATTTGTGACCGTTTcttacagtaacagtaacagccCTGTAGTGTAGATGGTTTCTATGGCTTCCCAGTCATCTGTTCCACTTGAAATGAAAGTCAAACCTCGCAGGAGCTGTTTGCAAGGACTCACTGACTTTATGTAAATAGTTGTATATTCTCCGTCTGTGGCAGCGCAAATGGTTATTTAGCAGCAGgtagtaacaaaaacaaact

Function

GO:      GO:0008536

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144767 True 3901 TUCP 0.41 9 7743218 7773892

Neighbor

gene id symbol gene type direction distance location
AMCG00018303 rbfox1,LOC107568067 coding downstream 582584 7153091 ~ 7160634 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding downstream 606371 7133898 ~ 7136847 (-)
AMCG00018304 NA coding downstream 867040 6866912 ~ 6876178 (-)
AMCG00018301 NA coding downstream 892424 6827619 ~ 6850794 (-)
AMCG00018299 NA coding downstream 916995 6821595 ~ 6826223 (-)
AMCG00018310 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860 coding upstream 109315 7883207 ~ 7894569 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding upstream 170225 7944117 ~ 7972869 (-)
AMCG00018314 NA coding upstream 266618 8040510 ~ 8045893 (-)
AMCG00018315 NA coding upstream 294309 8068201 ~ 8073947 (-)
AMCG00018316 NA coding upstream 305343 8079235 ~ 8081255 (-)
G115580 NA non-coding downstream 471 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 1008 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 8834 7734097 ~ 7734384 (-)
G115534 NA non-coding downstream 741213 7001802 ~ 7002005 (-)
G115395 NA non-coding downstream 1524002 6217528 ~ 6219216 (-)
G115596 NA non-coding upstream 68445 7842337 ~ 7842708 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding upstream 86424 7860316 ~ 7868626 (-)
G115732 NA non-coding upstream 656234 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 743442 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 1087981 8861873 ~ 8862377 (-)
AMCG00018291 NA other downstream 1090445 6610633 ~ 6652773 (-)
G115320 NA other downstream 1792163 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2376464 5356846 ~ 5366754 (-)
G115183 NA other downstream 2438789 5300107 ~ 5304429 (-)
G115174 NA other downstream 2455345 5286386 ~ 5287873 (-)
AMCG00018344 NA other upstream 868004 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 892845 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 1465920 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 2000414 9774306 ~ 9779545 (-)
G116165 NA other upstream 2145154 9919046 ~ 9924582 (-)

Expression


Co-expression Network