G115585


Basic Information

Item Value
gene id G115585
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7883205 ~ 7890901 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144776
CCCCTCAGTGGCTCCCCATTTCTCtgtttacagtaaattaaaccCAGTGGTATTGCATACATACTGCAGTACAGGTAGTGCCAGGGTTGTCTATTTCAGACAGGGTGGGGAGACAATCGTTCCTAACGGATCGCCTGAAAAGATTGATCCGTGCTCCTGAAACATACAATACGGGCTTCCCTACAGGAATGACAGGAACATCATTATGAATCCACAATCCAGCCTCTGATATATTGTTCAGCACTAACCAACCTAAGAGACCAAGTACTGTAGTATTGTCATATATAATATGTTGTGCACAGTGCAATGTTATGCAGTTATACCAAATACATATCAATACTAGAACAGGCTGTATTCTGCACATTGCATTACTGTTACTGAGcgacattttgttttctttctaagtGGGGGAAATAAGTCGGAGCAAATCCAGCCTCGCTCCTGCTGGCATTCCTGTCATCTACAAATCCCCGAGTTAATTCCTGTCCTCCTGAGATACCACAGgcccaagaaacaaaaaaagcaccaAAGTTGCTTTAATTGTAAACATCGCTGCGTCTGCAAATGGTTCAGCTGACTCAACAGATGGCAACGTTGGATTGTGCAGCGTTACAGGGGCTTCTCAGAGAGCCAGagctcaaaataaataaaaacccaacaacaacaaaacaaatacctcCTCTTTGAATTCCTCCCCTTTTATTCTGCTGTAAACTAGCTTTAAGACACAAAACCCAGCTTAGTAAGATTCCCTATCGCTTTTCCCccatacaaaaaacacataaataaataaataaacaaaacaaataaatacatgtctaaataaaataataaattcataaatatgcaGTCACATCGTCACCTAGCTTTGATGCCAACAGGCTACTCAGATCGAATCGAAATCTCTGGCTGAAGGATCTGCTCACTACCCACCCGGTCTACCACAGCTCCGGTGTGTAAAACGTGGCGCGCCCGAGGACATACACCGTAGGAGGAAGTTCGACCGATTGAACCCATCGGCACCCTGCGTCCGCTCGCTTCCTTAGCTGTGTTCTGCTCAGACCTCTCTTTACATCGATCGCCAAACCTCACCTGACAGGCCTCCAACGTACCCTAGCAGTTAGAGCAGCAAATCCAGATCTACTGCGGTGCTGGAGACTCCAAACCCGAGCAACATCTCATGGCTCCTCACTGCCATGGTAAATACGTGATCTATTGCATGGTTTTACTGTATATTCACTTTACAAAGATCCACTTTTGTGTGAATAATAGCATAATACATAATGCAGTTGATTTCCCTATCCCTTCTGTCAATTTTTTGAGAATATTTCCACCCACTTCTTTCCCCCGGTTCCTACACTGCATCGCTGAAGACAGTGGGCCTGCAAACGAGGtcatacagtgcagtacagagtCCCATCGGTCTTACATAATGTATCCTTAACATGGCAAcaggagaggaaaaacaaaaacgggCGACCTTTCACTTTGTCCTTTTTGGCTTGAAGGTGGAAAATGCACAGTGTTACATCAGTAGTTATTTAGAGTTCTATCTGTATTCTACGGCATAGACACAAATTCAGTACATCGAACTATATAGTCGAAGGTTAGCATGCACATCCGCAGTGCCAAACGACTGAAGATTAATCATGCGCCTTTCACGGCAGGCATGTACTCCACAGCTGGACAGACGTGCTCTCCAGgtgtttttaattctgataGGGGTCGTTAGTTCATTGGAGCTGCCTATGATATGCCACACGAAGGTGGAGATCATTTTTGCGGGCTGTTGGTTTTCTATAAGGAGTTATATACATTGTTATTTGATCACTTGATTGTCACACTGACACTGATTATAAAGGACATTTAAATATTGCCTTTCCTGGCTCTGGCAGACACAACAAGTCATCGCAATAACCTTAATCATACAACCTGAAGCACCCGCTGCAAAACGTCTGGTGTTTTTTGTGGTGTGAACCAGCATCCCCAGGTATTGAAGGCCACCTCCGTTTACTACCGACTCGGATCACTAGAGAGGAAAAGCGAGAAACTAACCCAATCTTCAATATTCCAGAAAACCAGCCCTGGAAAACACGGCTGTTCCGAAATGCTGCCGAAACGAAAGTGGGGGTGGCTTGTGGCTCAAGTAGCCACCAACACCCAATCAGCAACGGTGCCAGGCATTAAGGGgaggagagcagagagcagagaaaaCTGTGGCGCTGTGTAAAATCAGACGGCAACAAGAGATGGAGGGAAAACCAAGAGAGAGATGTCTTCCTCCAgaaccagaaaaataaacagaaattaaactgaaaaggcaaaatatttatagaaaacaaaagtataggAAATGAAAAGTAGACTCCCTTCATTTAAAGCTGGGGGGTTGGCATTAACATCAGCTATTCCTGGCATCTCCTGCCAGCCCGAGAGGCCCGAGCCGCGCTGCCTGGGGGGTGCTGTGACTGTTCACTGTGAGCCGCTCTGCGTCTGTACCGACTCCAGAGTTGTGTTCGAGCAAAAGCAAATAACTCCCTTGAtccttgtttttgtgtgtgtacatttctgCACATCCCTCATCCCATCCAAGCTCATcccatatacacacacaaacacatgtatatgtatgcatgaaCAGTATGAGATTCGTGTACCAATCTGTACAATACAATGTGTTTATGTCTCTAAAGACAACCGTGGGCATCTCTGGTCACCCCGATACAACGTCTAAAGGGTCACAATAAAGGGGGCATATCTTCTGATCTATAATATGTCTCCCACCTCCGAACTCCTTAGCTTTGTCTTCTGTACGGAACGATAGGGAAGCGTGTAGAGCAGGACAGTTTCACCTCTCAAACCTGCGCACTGTCTGACCTCAAGAAActctattaaaatgaaataaatattttgaaaaggccAAGCTGAGCAGATTACCTAATGTATGTACAGCGGAGTCGCTTCTGAATTGAACCCCTTCCCCACCGCAAGCCCACCACACCCCCAAAGAGAGCCATTTTCGAAACCAAAGCCTGAAAGCCAAACCACTCCTTCACAGCATATCAGTGTCTTACACTCGTACGATGTTAGcaacttttattatattttacatgttacGATTAGGGTAGTTGTACCTTTTTGTCACGGAGGCTTCCCCTCTTTCGAGGAGTCTGAATATCTTGATTGCTTaccacaaacattttttttttccttcgttaaaaatcatattgaaaaaataatacttcaaacaaaacaaaaaaatcagcaTGACAACAAGCGGGTAAGCGTGCAgctcagacaaaaataaaataattctacatagctgttttctttaaatatttctattttctttttttcccccccgttAAGACACAGACATGGAAAAACCAGCTTGAAGACCACAAGGGGCTGAAAGGGAGCTGGAATTACGCGAGACAGCAGCCATCGCTATGTGCCGAGCACGTTCGCAAAGAAACCGGGCCCCTGCTGCTTCTGTCTTCTCCCCTCGCTGCCTCGCCTTCTCCCCACTTCCCGCCATACGCCTGGTACAAGTACGCAAAATGGCTGGAGGAACCTGTACACACAACCTTTGAAAAAACATGGAATGATGTCACACCGAAGCGAAAtttcagttcttttttttttttatgattttcgtttttttaaatatttcatatatgtgtgtgttttttttgagatttttcatgttttctgtatATTCCTTCCTGCTAAAAGTTTTGCCATTTTGTCTATTTCAGTTAATCAAGCCCCcgctcattttttatttgtccttCCTTCCTGTATGTCGTTCCTTCCTTCCGTTAAATTCTTTCAgccttgcttttgttttcccttttttttgttgtttgttgttgatttcTCCCTCAGGTTCTGAATGAAGTTGGTTGGTCAGCTTTCGGTTTTGACTGGAGGAGAAGGTTTTGGTGACGTGGCGATGTCACCTCTTTGCTCTGGCTACTCGATGACCATGCAGCGAGGCAGGTGCTGCGAATAGTACTTGAAGAGCTCAGCTGTGGCCCCGGGACAGTTGGTGAGCTCTAGCTCCTCCAGGTCCTGCAACTGAATGAGACCAGAGAGCCCCGTGGTGGTGAGCAGAGGGCAGCCTGAGAAGCAGAGACAAAGGCAGGCAGATTAGAAACAGCCTTCTCCAAATGCTGTTCAGGATACTGCAAATCAAAACTCTTCACTAGGAAATAGCTTGAGTActtaaaaagcagaaacaaaaaacaaagaaatacaaggGAGGCTTCAAGAGACATCAGGGCTGTTGAAGAGCTTATTTGGCAACCTACGTCTGAATGGCCATCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144776 True 4332 lncRNA 0.44 2 7883205 7890901

Neighbor

gene id symbol gene type direction distance location
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding upstream 5012 7845467 ~ 7878193 (+)
AMCG00018308 NA coding upstream 68414 7804239 ~ 7814791 (+)
AMCG00018305 NA coding upstream 136721 7737626 ~ 7746484 (+)
AMCG00018300 NA coding upstream 983537 6883935 ~ 6899668 (+)
AMCG00018294 NA coding upstream 1054465 6827691 ~ 6828740 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding downstream 159509 8050410 ~ 8074161 (+)
AMCG00018313 NA coding downstream 183777 8074678 ~ 8078774 (+)
AMCG00018319 LOC107568381,LOC106511642,LOC104967806 coding downstream 192071 8082972 ~ 8089974 (+)
AMCG00018317 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266 coding downstream 206487 8097388 ~ 8114190 (+)
AMCG00018318 NA coding downstream 225168 8116069 ~ 8118432 (+)
G115560 NA non-coding upstream 162241 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 796239 7085574 ~ 7086966 (+)
G115514 NA non-coding upstream 1044344 6837706 ~ 6838861 (+)
G115511 NA non-coding upstream 1049893 6829088 ~ 6833312 (+)
G115467 NA non-coding upstream 1103159 6733707 ~ 6780046 (+)
G115591 NA non-coding downstream 7039 7897940 ~ 7898180 (+)
G115640 NA non-coding downstream 203299 8094200 ~ 8094449 (+)
G115679 NA non-coding downstream 403515 8294416 ~ 8347836 (+)
G115678 NA non-coding downstream 461176 8352077 ~ 8372827 (+)
G115796 NA non-coding downstream 812256 8703157 ~ 8704903 (+)
AMCG00018280 NA other upstream 1135767 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 1722589 6155488 ~ 6160616 (+)
G115299 NA other upstream 1932188 5949463 ~ 5951017 (+)
G115049 NA other upstream 3119300 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 3279100 4594933 ~ 4604105 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other downstream 2726 7893627 ~ 7894449 (+)
G115648 NA other downstream 228877 8119778 ~ 8122171 (+)
G115789 NA other downstream 802463 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 1308756 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 1348910 9239811 ~ 9245234 (+)

Expression


Co-expression Network