G115590 (fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242)


Basic Information

Item Value
gene id G115590
gene name fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7893627 ~ 7894449 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144781
CCATTACATGGATGGTAAAAGATAAATCTATGAAGAAACAATGTGAAGTAAAGATGATACTAAGTTCTCATTCCATTAATACACCCAaattaatacaacaacaaaacaacagcccTTTACAGACCCCAAAGTAAAGAACACACtagctgaaaaataaatctttaccTCTAAACCAGCATCTGTGATGGTGGACCTCTTGAGACTGACTGACTTTACACCCTTCTTGGACAGAGGGTAGTTGTCGATGAACTCGCAAATGTCCAGGTCGGAGACGCCCACCAGGCAGAATGCATGGAATCCCCTCAGCGCAAAGGCCTGTAGGCTGACAAACTCCTTCTCCCCATTGGGCAGGATGCTGTAGAGTTCCTTGGCATGCAGAATAGGCGTCACCCCTTCCCAGAACTTGGCCTGGTAGAGCACCTTCCGCCAGGTCTTGCACACCTGCGCCAGAACGCACTTCTCTGTGGTGGTGAAGTACCACAGCAGCCGATTCAGGACCTTCTCATCCAGCACCAGCTGCCTCTCCAAGGAGGGCTTGGAGAGCTTTCTCCGGGGGGGCTGGTCGGATGTGGGGGAGCCGGCGTCCGGGTCGGGGCCCAGCAGGGACGCGGCGGTGGGCAGGGGCTCCATGTGGTAGGGCAGGCTGGGTGGAGGCAGGATGGTGGGCACCGAGGAGGACTGACACAGGCGGTTCTTGGCTGCCGGTGTCCCTTTTGTGATGCTGGCAGAGCCCAGGCCATTGGGCTGTGGGGGAAGCTTGACCAAGCCGTTCCTTGGCACGCAGGGAGACTTGAGGTCGTTGGGAGTGGACATCTTCAGCATT

Function

symbol description
fbxl16 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16).

NR:

description
PREDICTED: F-box/LRR-repeat protein 16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144781 True 823 TUCP 0.55 1 7893627 7894449

Neighbor

gene id symbol gene type direction distance location
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding upstream 15434 7845467 ~ 7878193 (+)
AMCG00018308 NA coding upstream 78836 7804239 ~ 7814791 (+)
AMCG00018305 NA coding upstream 147143 7737626 ~ 7746484 (+)
AMCG00018300 NA coding upstream 993959 6883935 ~ 6899668 (+)
AMCG00018294 NA coding upstream 1064887 6827691 ~ 6828740 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding downstream 155961 8050410 ~ 8074161 (+)
AMCG00018313 NA coding downstream 180229 8074678 ~ 8078774 (+)
AMCG00018319 LOC107568381,LOC106511642,LOC104967806 coding downstream 188523 8082972 ~ 8089974 (+)
AMCG00018317 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266 coding downstream 202939 8097388 ~ 8114190 (+)
AMCG00018318 NA coding downstream 221620 8116069 ~ 8118432 (+)
G115585 NA non-coding upstream 2726 7883205 ~ 7890901 (+)
G115560 NA non-coding upstream 172663 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 806661 7085574 ~ 7086966 (+)
G115514 NA non-coding upstream 1054766 6837706 ~ 6838861 (+)
G115511 NA non-coding upstream 1060315 6829088 ~ 6833312 (+)
G115591 NA non-coding downstream 3491 7897940 ~ 7898180 (+)
G115640 NA non-coding downstream 199751 8094200 ~ 8094449 (+)
G115679 NA non-coding downstream 399967 8294416 ~ 8347836 (+)
G115678 NA non-coding downstream 457628 8352077 ~ 8372827 (+)
G115796 NA non-coding downstream 808708 8703157 ~ 8704903 (+)
AMCG00018280 NA other upstream 1146189 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 1733011 6155488 ~ 6160616 (+)
G115299 NA other upstream 1942610 5949463 ~ 5951017 (+)
G115049 NA other upstream 3129722 4761518 ~ 4763905 (+)
AMCG00018216 telo2 other upstream 3289522 4594933 ~ 4604105 (+)
G115648 NA other downstream 225329 8119778 ~ 8122171 (+)
G115789 NA other downstream 798915 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 1305208 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 1345362 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1545208 9439657 ~ 9447144 (+)

Expression


Co-expression Network