G115599 (sept12,LOC107568113,LOC107690244,LOC107733855)


Basic Information

Item Value
gene id G115599
gene name sept12,LOC107568113,LOC107690244,LOC107733855
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 7860316 ~ 7868626 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144791
CAGTGGCCTGTAGGTGGGACAAAGTAGACACAGCAGTGAATTCTGGTGTCGGGGATTCGTCTTTTCCTGTTGATGTTGAGCTCCTCCTTCAGGTACTTCTCATACTGCTCATTGATGTACTTCACAATGGGCTCCCAGCAGTTCTCGTTGTTAATCTGGTCTCCGAAGCCAGGGGTGTCAATCACGGTCAGCTTCATTTTCACACCCTTCTCTTCAATaaCATGGCTAATAGACTGTAAGTTGACTGTCTTGGAGATCTTCTCTTCATAGTTGGGCGTGCAAGACTTTCGGCTCACTTTGGATTTGAATAGTGTGTTTACCAGTGTCGACTTCCCCAAACCACTCTGAC

Function

symbol description
sept12 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization and cytoskeleton-dependent cytokinesis. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Human ortholog(s) of this gene implicated in spermatogenic failure 10. Orthologous to human SEPTIN12 (septin 12).

NR:

description
PREDICTED: ran-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144791 True 349 lncRNA 0.47 3 7860316 7868626

Neighbor

gene id symbol gene type direction distance location
AMCG00018306 NA coding downstream 96557 7745096 ~ 7763759 (-)
AMCG00018307 NA coding downstream 116638 7721264 ~ 7743678 (-)
AMCG00018303 rbfox1,LOC107568067 coding downstream 699682 7153091 ~ 7160634 (-)
AMCG00018302 LOC107568067,LOC107685930,LOC107733849 coding downstream 723469 7133898 ~ 7136847 (-)
AMCG00018304 NA coding downstream 984138 6866912 ~ 6876178 (-)
AMCG00018310 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860 coding upstream 14581 7883207 ~ 7894569 (-)
AMCG00018311 gsg1l,LOC107738642,LOC107690243,LOC107685933,LOC103366699 coding upstream 75491 7944117 ~ 7972869 (-)
AMCG00018314 NA coding upstream 171884 8040510 ~ 8045893 (-)
AMCG00018315 NA coding upstream 199575 8068201 ~ 8073947 (-)
AMCG00018316 NA coding upstream 210609 8079235 ~ 8081255 (-)
G115596 NA non-coding downstream 17608 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 117569 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 118106 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 125932 7734097 ~ 7734384 (-)
G115534 NA non-coding downstream 858311 7001802 ~ 7002005 (-)
G115732 NA non-coding upstream 561500 8430126 ~ 8433570 (-)
G115807 NA non-coding upstream 648708 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 993247 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 1332174 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 1612284 9480910 ~ 9482152 (-)
G115581 NA other downstream 86424 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1207543 6610633 ~ 6652773 (-)
G115320 NA other downstream 1909261 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 2493562 5356846 ~ 5366754 (-)
G115183 NA other downstream 2555887 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 773270 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 798111 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 1371186 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1905680 9774306 ~ 9779545 (-)
G116165 NA other upstream 2050420 9919046 ~ 9924582 (-)

Expression


Co-expression Network