G115640


Basic Information

Item Value
gene id G115640
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8094200 ~ 8094449 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144843
AGTTATTTGTCAATATTATTTGCCTTCTACTTAGGCAATTAAAGCTCAGGATTAAGATAGCTTTGCAAGATACAATCCCCAAAGCAAGAGTCTTTTTATGTGAAAACTCCATTATTGTTGAAAGGTTACTATTGATCAGAGCCTGGTGTACCAATCATGTTTGGGACGACTGTGCATCCATCTCCCGCTTTCCTGCTGAGGTCTCTCAATTACAGTACTATGTGTACATTAtgtgtacattatattattG

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU144843 True 250 lncRNA 0.37 1 8094200 8094449

Neighbor

gene id symbol gene type direction distance location
AMCG00018319 LOC107568381,LOC106511642,LOC104967806 coding upstream 4226 8082972 ~ 8089974 (+)
AMCG00018313 NA coding upstream 15426 8074678 ~ 8078774 (+)
AMCG00018312 flr,LOC107733869,LOC107738612,LOC107568167,LOC107680859,LOC105900006 coding upstream 20039 8050410 ~ 8074161 (+)
AMCG00018309 sept12,LOC107568113,LOC107733855,LOC107690244 coding upstream 216007 7845467 ~ 7878193 (+)
AMCG00018308 NA coding upstream 279409 7804239 ~ 7814791 (+)
AMCG00018317 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266 coding downstream 2939 8097388 ~ 8114190 (+)
AMCG00018318 NA coding downstream 21620 8116069 ~ 8118432 (+)
AMCG00018321 NA coding downstream 45558 8140007 ~ 8150550 (+)
AMCG00018320 LOC104942092 coding downstream 60361 8154810 ~ 8167750 (+)
AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding downstream 195552 8290001 ~ 8315541 (+)
G115591 NA non-coding upstream 196020 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 203299 7883205 ~ 7890901 (+)
G115560 NA non-coding upstream 373236 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 1007234 7085574 ~ 7086966 (+)
G115514 NA non-coding upstream 1255339 6837706 ~ 6838861 (+)
G115679 NA non-coding downstream 199967 8294416 ~ 8347836 (+)
G115678 NA non-coding downstream 257628 8352077 ~ 8372827 (+)
G115796 NA non-coding downstream 608708 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 767632 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 774093 8868542 ~ 8870342 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 199751 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1346762 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 1933584 6155488 ~ 6160616 (+)
G115299 NA other upstream 2143183 5949463 ~ 5951017 (+)
G115049 NA other upstream 3330295 4761518 ~ 4763905 (+)
G115648 NA other downstream 25329 8119778 ~ 8122171 (+)
G115789 NA other downstream 598915 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 1105208 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 1145362 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1345208 9439657 ~ 9447144 (+)

Expression


Co-expression Network