G115678


Basic Information

Item Value
gene id G115678
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8352077 ~ 8372827 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144883
CCCcctttattaaacattaatatacatcATACAGGGAAATAttgatgtaatatttaatacCCATACAATATGCACACATATTGAAACCatgtagaatacattttgtCCATGCACTCATACGGTGTAAAAGTAAAAGTCACCTTACACCTTAATTGTACTCATTATAAAACGTGGCTTAACATTTAACATCACGACCTGTCAACACTGTAAAGGAGTCATCAGGCCGATTGGAATACACTTGAAAGACCACCGATGACTGGAAAAGGACTGGAAAGCAGATCCTGAACCTAACAAACCAGTCTGATCAACAATCCCATCCATTTATAATATAGAAATGCAcgttatagtgtgtgtgtagaataCTGAAACACAGACCATCCATTCATtccttcttttaatttattatcagtTCTTATTTCTTGAATACATAATTCAGAAAGTAACAGGTAAAATGAAGGGAGAAGTAAAAAGGCCAAACTCAAAGGATTAGCCTACCTACAACAAATATACAGACAACACCAGAGAAGCAGAAAGGACAGATGTATTTACAGGCGAGGAAAGTGTCCAGGCAGTGGCACTGGACCGGAGAACGGGCGAGGTCAGCTAGTGGAGCTGGATCGGGCAGAACGCAGATGTTCTGGTAAATACAGCAGTAAGTTTTAACACTTTGTACCCTGGATCAGTGTACCAGAGGACAGTCTTTTCTTTCGAATATTGATGTCCAGTTTCCTTCTACAAATGTCAGTGCAAcgttaaaaacaagaaaacaaaacaatagagcAGAAATCCAATTGCAAGGAAGCTTGCTTTGCAATTCCCAGccatacaaaaaaacatcaatttcaATCAAACAATCCACTTGGCAGAAGCAATATCCCTCACAAAGATCTGTACAGGAAATCATATATCCACTAGGTGTGTTAACCTATTTGTTTCCACATTAAAAGAAAGGATTACAGCACAAGTTTAGGTTATTAATGAGGACTCGTTCGttttatcattataaattaTGAACAAGCCTGGCTTTCTCCACTCCAGTCGGGTTTGCAGCCAAGAATGGATTGAGGCTGACACTCTCTCTAATGAGCTGCAGAATAATGAGGGGAGGATGTACATATGAGTGGGGGTGGGAGGATTTTTCAATACTGTGATGAATCTTGGGAACAAAGAagttggtttaaaaaaacacaacaaaaagctCATTAgtcaaatgaaaacagcagGCAAAACAAATAACTTAGCATTGCATTTGGGGGGGTTGCTTGTGTATAGATGCATCGACTTGCTGCACCCCCAGCCCAGCCCTCTCCAGAAGGAAGGCATCCGCTTGGTGATCGAGGGACGAGGAGAGTCTGTAGGCTGATTTCATTGGCCTCGTTCTGAACAGGGAAGTGGGGTGCCCTTTTCTCCTCAGTGGCTTTCATTTTACTcattcttcttctccttctgctTGAGCAGTTTGTTGATCTCTCTCTTGGCCATGGCGGCGTACTTGCTGATGAAGCCGTGCTGGTTCAGCCCggggagcagcagcaggaagcTCACAAGGTAGGTCAGGAACAGGTTGTGAACCTGCTGTCCAATCCAGGCCACCACCACCAGAGTGATGATCACAGACATGAAGTACTAAGAAGGGATGGGAAAGTCAAAGTTATCAAACGTACCAACCACACACGTTAACACAGGTGACTCATGGCAAAACTAGACTAAAGTCTAATGGTTGAAGGCCACATCAGTAAGGCCCTTTGGTCTCCGCCTCACTGAGATTAATAGCTGTTAAAATACATGTCTTTattgataaattaaatattcagtttgtGATTTAGCCTACAGAAAACCGCAAAGCTCCCTTCGATTGAACAGAGTTAAGAAGCGGCAGCCAGATAGTtatactttcaactacaaaaCGCTGAGATGCTGGGTTCTCTCGTTCTTCAGTAGCTGCTCTACTGCACCGTGTTCTGGTGTCACCCTGCCCTCTCCCCCACCACCTGTCCATTCCCCAGCCCCACGTACCATCTTCGGCTTCTCCTCTTTCAAAGCGAAGATGCGTTTCCACCAGCCCACTACACGGCGCTGGGTCTTCACCAGGTTGCCACAGATCTCATGGAAGCGCTGCTGCTGTTCAGTGGTCACTTGTTGGAACCGAAGATTCTGGGAGCGAGGGTGGGCACCAGGTAGTCCGCCAGACACAGGACCATCACCATGCAGGACACCCCGGTCAGCACAGAGGGGTCCAGGATGGTGATGGTGTTGCCCACACTCTGGATGGTGACCGCGTCGGTGGCGGAGACTTCCCCAGGCAGGGCGATCTCGGTGCTCTCCATGGCCGCCAGGCGGGGGCTGATCTCGTCTAGCCGCAGCAGGTAACTGGCGCGCTTCTGGGCCCGCTGCTGCAGACTCAGCATGATCTGAGACGTGACCGCAAGGTTAGAATGGGCACTACACGCATTCAAGTTGTTTCTCTAACCCCATTTTGTTGATCACGATTGATCAACTGAAATTGTATGTTCTCTATAAATTTAAATGCACCTCCCACTACACTAAGAGATTAATAGTATGTCCCCCCTTTCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144883 True 2576 lncRNA 0.45 4 8352077 8372827

Neighbor

gene id symbol gene type direction distance location
AMCG00018324 NA coding upstream 706 8350111 ~ 8351371 (+)
AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding upstream 36536 8290001 ~ 8315541 (+)
AMCG00018320 LOC104942092 coding upstream 184327 8154810 ~ 8167750 (+)
AMCG00018321 NA coding upstream 201527 8140007 ~ 8150550 (+)
AMCG00018318 NA coding upstream 233645 8116069 ~ 8118432 (+)
AMCG00018327 LOC107674142,LOC107732858 coding downstream 27006 8399833 ~ 8404453 (+)
AMCG00018332 LOC106588920,LOC100691027,LOC101464353,LOC102776973,LOC102312408 coding downstream 113739 8486566 ~ 8514892 (+)
AMCG00018333 cp063,fopnl,LOC106564614 coding downstream 169164 8541991 ~ 8543115 (+)
AMCG00018336 myh11,LOC103025732 coding downstream 180761 8553588 ~ 8592721 (+)
AMCG00018335 NA coding downstream 231894 8604721 ~ 8623654 (+)
G115679 NA non-coding upstream 4241 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 257628 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 453897 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 461176 7883205 ~ 7890901 (+)
G115560 NA non-coding upstream 631113 7720607 ~ 7720964 (+)
G115796 NA non-coding downstream 330330 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 489254 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 495715 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 663503 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 826050 9198877 ~ 9199440 (+)
G115648 NA other upstream 229906 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 457628 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1604639 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2191461 6155488 ~ 6160616 (+)
G115299 NA other upstream 2401060 5949463 ~ 5951017 (+)
G115789 NA other downstream 320537 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 826830 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 866984 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1066830 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 1108125 9480952 ~ 9486146 (+)

Expression


Co-expression Network