G115679


Basic Information

Item Value
gene id G115679
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8294416 ~ 8347836 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144888
ttttttgttttttTCCAGTGGaaactgttttatttgcagGTGCCTTTACATGTTTTAGAAAAAGAATCCCAGGATTTTGCCTCCTGTGTGTTTTCGTCTGGCTTCTTCATGGTCCATGATGCCAGCCGAGGTGGTCAAGACGATGTACCAAACTGTCGAGAGGGCAGCAGGTTGTTCTGCCACTTCTCCAAATCCTTAAGCTGCACATCAAATCGGGGGCTGATGACACCACACTGGCAATGACAAGGGACAACCATTAGACAGCCCACATTACAAGGAATGAAAAGCCTTTTCATATGGACCACATGCCTACATTTGCTTCACTATgacattgttttgtaatgttagtGTATGATTTTCTGGACTAAAGACAAAAAGCAGTTTGTGAGCAGAAGCACCCAACCAGACACAAAtccaaaggggggggggggggggggggagatgaAAACAGACAGCTTGGAGAGTACACCATCTTCACAAAAACTCCAGAAAGCATTACCTTGTTCAGCCTGCCTGTGAGATTAACAACTATTTTCCCAGCTCTGTGATCGTCGATAATCTCGAACTCGCCAATGTAGCGTGCTTCATCATGACGGTGAGGAAGCGCACGATGACCTTGGAGCAGGGCCGGATCAGAACCTGGCGTTTCCCACGTTTCTCTGCATTGTTGATGCTTTTGAGCGCATCGGCGAGAACATTCATGCGCACCATGATGCCTGTGGAGATTCAACACATCCAGGTTAGCAAAAGCAG
>TU144889
ttttttgttttttTCCAGTGGaaactgttttatttgcagGTGCCTTTACATGTTTTAGAAAAAGAATCCCAGGATTTTGCCTCCTGTGTGTTTTCGTCTGGCTTCTTCATGGTCCATGATGCCAGCCGAGGTGGTCAAGACGATGTACCAAACTGTCGAGAGGGCAGCAGGTTGTTCTGCCACTTCTCCAAATCCTTAAGCTGCACATCAAATCGGGGGCTGATGACACCACACTGTTCAGCCTGCCTGTGAGATTAACAACTATTTTCCCAGCTCTGTGATCGTCGATAATCTCGAACTCGCCAATGTACCGTGCTTCATCATGACGGTGAGGAAGCGCACGATGACCTTGGAGCAGGGCCGGATCAGAACCTGGCGTTTCCCACGTTTCTCTGCATTGTTGATGCTTTTGAGCGCATCGGCGAGAACATTCATGCGCACCATGATGCCTGTGGAGATTCAACACATCCAGGTTAGCAAAAGCAG
>TU144892
TTTGATTTACCATTGGTTGGTTTCTTTAATGGAAAGTCTAAAAAACTGTTTGAGGTTTTGTACATGTGCAAGACACAGCGTGCATTAATGGGATATTGATAGAAACTCTTAACATGTACAAGACACCATGCAGCGTCGTCTTATAGCAGacagaacatgaaaacaaatgtacaggcATTTGCAAACAAGATACCATTCATACCGTTAGGAGCGTGCAGTGCGATCACCGATAACATTACTGTGACCACAACAGATCTCTCTCCATTCCAATGGATATCCATCTCTTGACCCCACCAACCCTAATTACATCAATGGCTCTCAGAAACAAAGGTGCCACGAGAGAATAGTAGCAGATGAAAAACTAGGATTATAGAAGTGGATATATGTGCCTATAAAGGGAGCATTGATGATGCAAAACACAACTAAGAAGAAACTTGAGTAAAAGGGATAAAGACAAGAAACTTTGTGGAAGGGGGATTGGAAAACCATGGTTGTAAGATTAATCACAAATCTTTTCACTTCTGAACAATGACCTTTTTGTGAACCAGTTAactggggaagaaaaacaaatctttacatGATACATTTAGAACTTGCATATGGCGAGAGATCCAGACAGCGCCGTCTGTCCGCTCATCCTgccaggaaacaggaagactaGTGAAAGGACAAGACTTGAAAGCCAAGCCAGGAAGAGACTGGGAGTCTCTCGTCACAACGATGATGACAGGTGAGCATCTTCAGAAGACTGCGGTGTTACTCACCCTGAACTGGGAGGAAATTATCTGAATTACATCGCACGACTTGGCCCTTCTACCCCTCACCgctcatttcaaatataaaaccgACATCAGAGCAACATTGGCGGCTGTGCCAAGATGTAATTCAGTGAGTCGGGAAGATTGCAAGATATGGGCGACTGTGGGATAGGATAATGAAGGATAATGGGATACAGAAATTACAGTTGGAATTCACATGTAGGAATAATTTGAAAGGCTGTTTTTCATCATTATGTTTAAATGAAGCAAgggaggaaataaatacaatctccCAAAAAGTATATGTTGAGAAGGGGATGGGGAAATACtgcagaacaaatacaaaagcataAACCTCCTACCCTCAGAAGCGTGTTAAATGCAAAGAAAAGCCCAAAGACTGAGGTGCTCACAGCATCTCACCTCAAACACTTTCCATGGAGCTCCAAGGTAACTCCACTCAGCAGCTGTTGCCTTACAGCTCCACCACAGCGCACTCTCTCAGCATGCACTTCGTTAAAGGTACAACTTTTCAAATACCGGAGTACCGAAAAGCAACTCCCCCCCAGTTTCTGCGTTGCCATCCCAAGAACGACCCTAATTACAGAGCAGTGTTTTGTCATCTTTTTTGATTGAATGCGTACATTTTCCAGCGCCtctaattttaattacagaacagCTCCACAACACAAGACATTCCCTGCCAGTTCCCAGCACTCAATTATTACAGCGCTCTGGGCGAACGCAGACGCTTTTAGAaccagatttcttttttattcattaattttaaatgctttgatatttatattttaacagcctaaattaaaattaaattattcattacaAAAGATGCTTCAATCTAAAATTTGCCAGCTGGCCACTCAACCCTCAGCTCTAAAAAGTCAACCAGGAAACCAGCTCTAACTGCCTGTGGAAAACACTAACCAAGGCTACCTTTCTCTGAGCTGGTGCTTGAGAACAACTGAATTACTATACAATAGAGACGACTGCTGGATGGGGAGTGACATGTCACTAGACCCCTACTCTAAAAAATTTGATATGAATCCATGTCCCAATAAGGGGTCACAATGAAGCTCACAGAATTAACCCCAAATAAAGGGTTACAGGACAACCACTGAAATTCAAGGGTTTGCCACAACAGTAAAAATTCAAGAACTACCTTCAGAATACTAAAACCTAGAAAATGAATTTCATAAATAGTCTCCCCAACTGGaatgttcatattttatgaataaagcTTTTTATGGAACCTGGCAAAACCAGGAtgactgaaatgtttaaatggaaGACTTCTGCCCACACGTGGACAAGGAGAAAAGTGCTTCTACAAAATTATTCTGTGAGCAAATGTAGTCtattaagaatataaaatataaaaatgtacattaaatcacattacAGAGTGCTGGAAAAGGCTTCTGGGGAACTAGGCATGTTCAGCAACTAGAACCAAGGAGACAAAGGAAGGTTTCAAACCGACTGGGAATTTGCCTGTCAAGCATCAGTTCAGGAAATTGACCAACACAAACAAAGCAGGAATCGCAACAAAGATACAAGCTGTAACCCCACACACAGCCAGGAAGCTGCAAAACTCAAATTTACACTGAACAAGAAAATGGAACCAGCTGCTCAATTCATAGCCAAATAACAAATTAGCACACGACTCATCCAAGTCCAGTGGaaactgttttatttgcagGTGCCTTTACATGTTTTAGAAAAAGAATCCCAGGATTTTGCCTCCTGTGTGTTTTCGTCTGGCTTCTTCATGGTCCATGATGCCAGCCGAGGTGGTCAAGACGATGTACCTGCAAACAGAGAGGGGCTATACGTCAGCACGACAGACCTGCATCACAGTATTCTGCTGATCATTTTAATCTCTGGTAGGATCTGACCAGAAGGCTCAAAAGCaggaaagcaattttaaatgCTCATGGCGCTCAGGTGACTCGATTGtaaacagcagcacaaacattAAGTTCCTCATGCTGAGATGGGTATAAGTACatgtgacaaaacaaaagtacattaCTTCATAATCACTGCTTAAATTCCACAATTACCAACACCTTACAGACTAATAATGTATGTACTGCAgtatagaataaaaaaaaacttaaacttGAAGCACTCATGAAACATTAAGAGTACAAGGACAAGCaagaattatataaataaaattaaagtagGCTATAGCAAGAGCATTTTCATCTCAtcacttaatgtttacaaatgacaaaagCTCAACATTGCGGTTTCTTTCATATTACTGtagatataattttaaaagatttataACCATTTAAATGGTTGTATGGAGTTCTGCAGAGTTTAGCGGCTGTACATTGCTCTACCCTTGTGAGCTGTGCATGATCCTGCAGAAAGCAACCCTGCTGTACATGTTTGCTTGCCTTATATAAAACTTAAACTATTTCTTGCATACAGTGCACTGCATTGCAAGATACATGTATTTTAGCATTCACATTCAAGTGGATGGAAAAATGCAGCATTGAACATTAAGCACATGATAAAGATGCTCATTTTCATCATGTTAAATGGCCATGTTTTTTAATAGTGAACTCTGCTAGAAAGCAGCACAATTCTTATGAAATAATTCTAaccatgtacaatgaaaaatgtgaacTAATGGGGTTCACTAGAGCTCCCACACAATGCATTCTGGCATCAAAACTGATGTGACCTGTCACCAGTGGACACTAAAGCAGAGAGACTTACCCAAACTGTCGAGAGGGCAGCAGGTTGTTCTGCCACTTCTCCAAATCCTTAAGCTGCACATCAAATCGGGGGCTGATGATTGTTCAGCCTGCCTGTGAGATTAACAACTATTTTCCCAGCTCTGTGATCGTCGATAATCTCGAACTCGCCAATGTAGCGTGCTTCATCATGACGGTGAGGAAGCGCACGATGACCTTGGAGCAGGGCCGGATCAGAACCTGGCGTTTCCCACGTTTCTCTGCATTGTTGATGCTTTTGAGCGCATCGGCGAGAACATTCATGCGCACCATGATGCCTGTGGAGATTCAACACATCCAGGTTAGCAAAAGCAG

Function

NR:

description
protein transport protein Sec61 subunit alpha-like 1

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144888 False 753 lncRNA 0.47 4 8294416 8347836
TU144889 False 486 lncRNA 0.48 5 8294416 8347836
TU144892 True 3847 lncRNA 0.41 3 8343130 8347836

Neighbor

gene id symbol gene type direction distance location
AMCG00018320 LOC104942092 coding upstream 126666 8154810 ~ 8167750 (+)
AMCG00018321 NA coding upstream 143866 8140007 ~ 8150550 (+)
AMCG00018318 NA coding upstream 175984 8116069 ~ 8118432 (+)
AMCG00018317 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266 coding upstream 180226 8097388 ~ 8114190 (+)
AMCG00018319 LOC107568381,LOC106511642,LOC104967806 coding upstream 204442 8082972 ~ 8089974 (+)
AMCG00018324 NA coding downstream 2275 8350111 ~ 8351371 (+)
AMCG00018327 LOC107674142,LOC107732858 coding downstream 51997 8399833 ~ 8404453 (+)
AMCG00018332 LOC106588920,LOC100691027,LOC101464353,LOC102776973,LOC102312408 coding downstream 138730 8486566 ~ 8514892 (+)
AMCG00018333 cp063,fopnl,LOC106564614 coding downstream 194155 8541991 ~ 8543115 (+)
AMCG00018336 myh11,LOC103025732 coding downstream 205752 8553588 ~ 8592721 (+)
G115640 NA non-coding upstream 199967 8094200 ~ 8094449 (+)
G115591 NA non-coding upstream 396236 7897940 ~ 7898180 (+)
G115585 NA non-coding upstream 403515 7883205 ~ 7890901 (+)
G115560 NA non-coding upstream 573452 7720607 ~ 7720964 (+)
G115535 NA non-coding upstream 1207450 7085574 ~ 7086966 (+)
G115678 NA non-coding downstream 4241 8352077 ~ 8372827 (+)
G115796 NA non-coding downstream 355321 8703157 ~ 8704903 (+)
G115873 NA non-coding downstream 514245 8862081 ~ 8862511 (+)
G115875 NA non-coding downstream 520706 8868542 ~ 8870342 (+)
G115896 NA non-coding downstream 688494 9036330 ~ 9036583 (+)
G115648 NA other upstream 172245 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 399967 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 1546978 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2133800 6155488 ~ 6160616 (+)
G115299 NA other upstream 2343399 5949463 ~ 5951017 (+)
G115789 NA other downstream 345528 8693364 ~ 8694719 (+)
AMCG00018358 polr3k,rpc11 other downstream 851821 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 891975 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 1091821 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 1133116 9480952 ~ 9486146 (+)

Expression


Co-expression Network