G115732


Basic Information

Item Value
gene id G115732
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8430126 ~ 8433570 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU144949
TGACTGGTAGATCGCAGGCTgtgttctattttatttatttgcttatttatttaactgtggTTGTGCCATAGACTTACAGATGTTTCCTATGGGCTTAAAGtgtcttcactgtgctttactacactccCATCATGAACAAACAATGGACTACCACAGTAAACCATATTTATCACAGTATTTCCCTGGTTCAGGATATAAAAAGCACTGTGAAGTGCAGACATCCGTTTGTGAATCTCCCAGTACGTGCCTGAACTGGTATTGAATTTGGATTGTTTATTGCTAAAAGGGGTATCCTGGTCATGAGAGGGTTAACTGAAACCATGTAACCATGGGCCCAGCCTTGCCTCTGAGCTGGTTCAGGCATGCTTGTCTAACTGCGATAACACCGCAATTACACCCGGTTGTCAGATTTCCAAGTCGAAGACACCATCCACTCCCTCTGTGATAGCGAGCTTTTaacaaggacaaaaacaaacacgcgGTGCCTGTGCCGTTCACAGTTTACTCAGTCAAAGCCAGTTTGTTTTGCTGAGGGGCTGAGGTATAACTGTTTGGCTGCAGGTGCTATAACTGAACTTTTTGGTTACTGAGAAGAGGAATAGGAAGGGGATTTAGGAACTTAGTGAGACTTACCTTCACTGAATTACTCACCAATTTCAACCCCAGGAATGCAATTACATGCAGCCTTGTACAGGAAAGTACTTTTAACTGTCTTATTGAAGTATATGTTGATGGTAGAAGTCTGCCTTTAAATTAGTCAGAGACATCAGAGCCCTGGTAGAATTAAATATGCAATCTCTCTGTAGGATACATAGACCCACAAGGCCAAGGCCCAGTGGAGACAAGGTGGGACTGTGCTGGCTTAATTAAGGGAGGCAATGGAAGCTGGGTTGAAGGCTGACATGTGGAGCTTCTGCATAGAAATGAACCCTGCCTTCAGTCAGTCTTATTTCCCTGAATAGCCAGTGCCATTGTTTCTCATGGAAGaggaaatcaataaattaatatacatactgtatatttaaaaagcaacaaccagaaaataaaatcaaaatcccATGGATGACTACACTTTTCAAATAACAATTTTTCCGCAACGGTTAATGTTATTCATTCTGCACTGTGGTTCTGAGTCCCCCGGATGAATCATTGTAATGTGATGGTACTCACGCGCTGGCGgtaaaaaaaaacctcactCGCCCTGCGTCATGCCTGTCTTCCTGCATAGGGGCTACGGGGGGCCCAGTGCCCCAGTCTGAAGGCCCTGGGCAGGATCTAGGGTCTTGCATCCCCACTGCCCCTCAGAGTCCAGTAATTATTTTGGTTGCGTAAGACTGTGTTGGCTCAAGTTGTTGTCACTCCTTTCTGACTTCCAGGAATGCAGTAATCGCAGTAATCACAGATATACTGcttcaagagagagagagagagagagagatagtgacagagacagagacagatgtagacaaagacagagagggagatgtGAAGCAAGTCACGGATAGGCCTGCTTGGGTGTGGGAATCAGACTATAGTGTAGAGCAGTGATTCTGAGATTTCAAACAAGAATTGATTTGATTCAAACAacttttctcttctgtttattttttcttaaatctgaGCTTTGTTTCAGTATCGACCAAAAAGtgtccctttttaaaataaatataactcaCTGTGTTCTTAATCTCCACATGCGGTAGAGCAAATCTACAGTATCTGGAGCACTATGTGTGCAGGGTCTTTCCCACACTGCCCCCTGACCCTTGCCCTAGAAGAAGCACTCTCAGGGGGAAACACACAACTCTTTGGTGACTTTTGGCCAGTGGGGGCTGCTAATATAGGACAAGTAACCAAAGTCTTCTGAACTTTGAGTGGGATTTGAACCCTGACCTGCAGGGCTTGAAGGGCTTACGAACAGAATCCTGTCAGAAGCATAGCTGGTTTTCTAGAATCCCAGTAGattccattaaaatgttttggaacGCCTCACACAAGATCTCTCGGTTTCCAAGGCAACGGTAGGCTGCCTGGAAATCCCCCCGGCTGCACATGTCGTGTAGTGGGTGACGTCCACACATACCGATAAAGTTGCCTAGTGGTCCGATTCCTGCGGCACACTCTGCTACGTGGAAGTAAGGCTGCCAGCTGTTTGTACTCAAAAGTTTGCTGTAGTACTTGGTGCTTGAGACCAGGCATTGGATGATCAACGCAACACATCCTTGTCCAGACATTTTCATGGCCAAATATCAGCCCAGGTGCCAATGACATTCAGCTACTGCCTGCTGTATTTCTCACACTTTTCTCTCATACACGGCACCCTCAAAATCCCAACACAACACCCACAACCGAGTACATAGTGTGTAATAATATAGTCTTGAGTATTGTAATATTAAACTGAATgggaaaaacaggaaaggaaaaagaaaaatatacttgTTGTTTAACCAGTACACTCTCCAACACTCCCATTCATTATAAGGagagtggagggagtggagggaGTTTCATGTTTATGAATTAAAACTTATATCTTTAGTTGTCTAAGGAAATGCATGGTACATAATAGAAAGTTTCAGATTTCAACTGAAAAAGTGACagatgcttatatataagatagtGATATCCTAGCTAGACTTCAATGAAGACATGTGTTTGTGCCAAATAATTGACCAGCAACATTGTCCGAGCCATTGTCACACCAGATCAATGAACtattagcatatatatatatatatatgtggtcATTCCTTTTtagtaatgttttgtttttctaaaatgttaaaacaggAAGCTGATATCATAAAATGAGCCACACTAACATGAGACTGTCTGACAACCCACGTGTTAATTACAAACTTGAAGTAAACAAGGGAACATTGTAACTGAAGAATTTAGGTGCTCTCAGAATTGGTTAagtcctgtttatttatttttttgtttgtttttttaattttgaaaaaaggtattttattttatagtttgttttaatttattttgttatagaaTGCTAAcggcatatttaaatattgaagcTATCAGGATTTTGCCCAgtgtcattaatttatttatttatatatttttggaaatacTTGCTAATTCAGGTTGACAAAACAAATCCTTACCAAAGCAAACTAAAAGGCACAGACTCAGTCTAGATCAGACCAAGCACAAAAGATCAAAACCTACTGGGTTAttatgtcttttaaaatgaaaacaaaaagtaattatgACTGAAAAGTGATTACAGGTGGATTCAATTTCATGAAGGGCTATTTTCTAAACagtattgttattttcatttgtatctaTGCACTCCAGTTTACAttgtatgtttatgttttaatgtactcTTCGTAAACGTTTTTGCACTTGCTGtttaattatatgcatatatatgtataggagcattgcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU144949 True 3417 lncRNA 0.40 2 8430126 8433570

Neighbor

gene id symbol gene type direction distance location
AMCG00018328 syt17,LOC107729446,LOC107658452,LOC107674134,LOC107564007,LOC107732856 coding downstream 7224 8409902 ~ 8422902 (-)
AMCG00018330 smg1,LOC107729485,LOC107564004 coding downstream 38986 8363373 ~ 8391140 (-)
AMCG00018326 arl6ip1,LOC107658451 coding downstream 69970 8343130 ~ 8360156 (-)
AMCG00018323 NA coding downstream 289880 8123318 ~ 8140246 (-)
AMCG00018322 NA coding downstream 307930 8119988 ~ 8122196 (-)
AMCG00018331 NA coding upstream 9625 8443195 ~ 8448944 (-)
AMCG00018329 coq7,LOC106564609 coding upstream 29749 8463319 ~ 8469629 (-)
AMCG00018334 NA coding upstream 86033 8519603 ~ 8541039 (-)
AMCG00018343 NA coding upstream 163523 8597093 ~ 8602734 (-)
AMCG00018341 clg6h16orf45,LOC101485480,LOC102775719,LOC108236367,LOC103355942 coding upstream 192307 8625877 ~ 8631588 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 561500 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 587418 7842337 ~ 7842708 (-)
G115580 NA non-coding downstream 687379 7742541 ~ 7742747 (-)
G115579 NA non-coding downstream 687916 7741974 ~ 7742210 (-)
G115577 NA non-coding downstream 695742 7734097 ~ 7734384 (-)
G115807 NA non-coding upstream 83764 8517334 ~ 8519203 (-)
G115874 NA non-coding upstream 428303 8861873 ~ 8862377 (-)
G115949 NA non-coding upstream 767230 9200800 ~ 9215817 (-)
G116058 NA non-coding upstream 1047340 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 1093922 9527492 ~ 9527736 (-)
G115581 NA other downstream 656234 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 1777353 6610633 ~ 6652773 (-)
G115320 NA other downstream 2479071 5950421 ~ 5951055 (-)
AMCG00018251 natd1,LOC107745813 other downstream 3063372 5356846 ~ 5366754 (-)
G115183 NA other downstream 3125697 5300107 ~ 5304429 (-)
AMCG00018344 NA other upstream 208326 8641896 ~ 8648807 (-)
AMCG00018339 NA other upstream 233167 8666737 ~ 8676808 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 806242 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 1340736 9774306 ~ 9779545 (-)
G116165 NA other upstream 1485476 9919046 ~ 9924582 (-)

Expression


Co-expression Network