G115875


Basic Information

Item Value
gene id G115875
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8868542 ~ 8870342 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145111
TGCTTGTTTAcccctttattttaattttataaaaccTTCTGTACCACCCCTACCCCCTTCCAACCAATCCACAGCACCCTTAAAACATAGGGGAAGAGGaagaatgtatataaaatgttacagattataataatagtaatgacaACAATTATATAGTAAGATAAAATGTACTACTTAgctaaatagaaaaatattttatatttcatggaTCCCAAGGTAAATAGCAATACATCAATTTGGAAGAATCAGCTCTAGGTCCAacacatttgtaatgattttccaatatgttttggttttgtaccTCAAAATTGTCTCTAAGCTGAACTTTTCAAGTGATGAATCCTTCAGTTCCATTACACTGCTTCTGCAAAACCTCAGCCAAAACACAATTCTCTCTATAGGTGTTTGGGTTAAACTTGACTCTGtgtgtaaacaaatacatacattttttaaaagccacCATGAAGTCCCAGCAAATCATatctaaataaacatgtatttgaaaacCAGAGAACCAAACTCATAAAATACTCCCTCAATAGAACCGATTCTTCAGGGTAGACTCAGCTGAACATATTTGACCTGGAATGACTAACGGTTTTCTTTACAAATTTAAGGACCAGTATGCCCTAAAATTGTGTCTGATGGGTGACAAATATAACACAGAGCACTTACACATTCTGTAGAGATGGTGAGATTAGCACAGCATAATTCATCGCGTGTTGGGCTGCTACTTAAGTACAGAGTGTCACTGCACTTAACAACCTTGATAAACTACCacaaagttaattgtttttgctGTAACACTTTTGAATGAAGAGACCTGTGAAGAGgaacagaataatacatttttctgtgtaaTGAGGTCAGTGCAGTGATTTCACAGTCCAGCACCTAGCTGCCGCCTTGTCCCGGCCATTTTTGCTCTGTTTTTGATCCGTTTCCATAGCAACTCACTCTTCTCCTGTTCCGCCAATTGGCATCTGTGGACAGAAAcgggaaaaaaagaaacctagCTAACCTAATCAGACTGTCCTTCCTCCTATTGGCAGCACCCGAAtggctatttattttgatgatttAATTTATCTCAACACAGCCAAAGTGGAGACTCTCTCCATTTCAAAGATGACCAGGCTGAATAGACATTTTCAGGCATCTGCAAAAGCAGAGGGATTCAGCAGTAGTTGGTTTACCGAACAAACACCCACTTCAGCAGAGTACCAAGGAGGACAATGCACTCTGGGAGATAACTGAAACTACACAAACTGTGAGTGCCAATGGTCTGAACAGTGATGCGCATGCGATATGTATTATGGGTTACCTTGGGTGGTTCCTGAGAAGTCTAGCTTACTGATTTAAAGTCATGAGAAGGCTGTTGGTGCCCAAGGTGGCAGGAGGCTTGGTGGCTGCTTCTACCCAATCACAGGCTTGGAGACTGTGGAGGTGCAAGGTCAGGCCAAGAGCTTCTGCAGATCTGGCTCAAGACCATCCGCAATGAGCTGCTCCAGGCTGTAGTAGTGATGGACCACCTTCTCCTCGGTCACCACCACTACTCTCAGGCCATGGGGGTCCGTCCCCAACTGGCAGCCAATCGCAGAAGTCACCACCATGTCCAAGCCGTCGTTAACTGCCCCGGCATTGCGGTGGTAGTGTCCAGAGAAGACGGCTTTCACTCCTGGACCAAGGAGAGGGAAAGACCAGGTTAGGTGGGTGGAACACAAACCAGAGATCCTCTTCAAAACAGATCAGTACTTGGGCTTAATAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145111 True 1769 lncRNA 0.42 2 8868542 8870342

Neighbor

gene id symbol gene type direction distance location
AMCG00018348 snx29,LOC107554039 coding upstream 21358 8813019 ~ 8847184 (+)
AMCG00018349 NA coding upstream 58068 8783629 ~ 8810474 (+)
AMCG00018345 snx29,LOC107554010 coding upstream 136614 8718740 ~ 8731928 (+)
AMCG00018338 NA coding upstream 201883 8650411 ~ 8666659 (+)
AMCG00018337 NA coding upstream 222434 8643855 ~ 8646108 (+)
AMCG00018350 NA coding downstream 61748 8932090 ~ 8937602 (+)
AMCG00018351 NA coding downstream 67273 8937615 ~ 8941636 (+)
AMCG00018354 NA coding downstream 149661 9020003 ~ 9021898 (+)
AMCG00018356 NA coding downstream 253971 9124313 ~ 9130120 (+)
AMCG00018357 NA coding downstream 285839 9156181 ~ 9156453 (+)
G115873 NA non-coding upstream 6031 8862081 ~ 8862511 (+)
G115796 NA non-coding upstream 163639 8703157 ~ 8704903 (+)
G115678 NA non-coding upstream 495715 8352077 ~ 8372827 (+)
G115679 NA non-coding upstream 520706 8294416 ~ 8347836 (+)
G115640 NA non-coding upstream 774093 8094200 ~ 8094449 (+)
G115896 NA non-coding downstream 165988 9036330 ~ 9036583 (+)
G115931 NA non-coding downstream 328535 9198877 ~ 9199440 (+)
G115939 NA non-coding downstream 357668 9228010 ~ 9230141 (+)
G115990 NA non-coding downstream 566690 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 602155 9472497 ~ 9477108 (+)
G115789 NA other upstream 173823 8693364 ~ 8694719 (+)
G115648 NA other upstream 746371 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 974093 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2121104 6710482 ~ 6747438 (+)
AMCG00018272 NA other upstream 2707926 6155488 ~ 6160616 (+)
AMCG00018358 polr3k,rpc11 other downstream 329315 9199657 ~ 9206776 (+)
AMCG00018360 f100a other downstream 369469 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 569315 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 610610 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 641972 9512314 ~ 9513236 (+)

Expression


Co-expression Network