G115939


Basic Information

Item Value
gene id G115939
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9228010 ~ 9230141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145190
TTCAGCCCTACAGGAAGGAGGAGGTGGACATCATTGGTACAAATGGTGTCCTGTACCGCGGCCGTCTGGAGCTCCACCTGCCCACGCTGCCCGCCCACGGCCACAGGGACAGGACCCCCAGGGGCGAGTCTGTCACAGCTGATTGAGACCTGGGAATGTGCTTGTGGGAGGGTTGGCCACGACAGGAACACATGGCGCCGCTGAAGACGAGAACTCGCCACCTGAGCTGAATCACAGCAACATTCTGTCAGACATGTCCCACACTCTCCATCTGTACATAGCAGTACTGGGCTGTTTGAGAGACAGTTCTGTACTAAGTGCTGCGATCTTCACTGCGGTCTTCACTTAATTGGCGTGATTTACAGCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145190 True 370 lncRNA 0.57 2 9228010 9230141

Neighbor

gene id symbol gene type direction distance location
AMCG00018355 NA coding upstream 40251 9162486 ~ 9187759 (+)
AMCG00018357 NA coding upstream 71557 9156181 ~ 9156453 (+)
AMCG00018356 NA coding upstream 97890 9124313 ~ 9130120 (+)
AMCG00018354 NA coding upstream 206112 9020003 ~ 9021898 (+)
AMCG00018351 NA coding upstream 286374 8937615 ~ 8941636 (+)
AMCG00018359 mgrn1 coding downstream 29313 9259454 ~ 9285418 (+)
AMCG00018366 NA coding downstream 61191 9291332 ~ 9295905 (+)
AMCG00018365 aanat2,LOC107672440,LOC107670449,LOC107596820,LOC106934031 coding downstream 124562 9354703 ~ 9359686 (+)
AMCG00018373 NA coding downstream 289526 9519667 ~ 9520987 (+)
AMCG00018371 NA coding downstream 315400 9545541 ~ 9561135 (+)
G115931 NA non-coding upstream 28570 9198877 ~ 9199440 (+)
G115896 NA non-coding upstream 191427 9036330 ~ 9036583 (+)
G115875 NA non-coding upstream 357668 8868542 ~ 8870342 (+)
G115873 NA non-coding upstream 365499 8862081 ~ 8862511 (+)
G115796 NA non-coding upstream 523107 8703157 ~ 8704903 (+)
G115990 NA non-coding downstream 206891 9437032 ~ 9437303 (+)
G116002 NA non-coding downstream 242356 9472497 ~ 9477108 (+)
G116011 NA non-coding downstream 297341 9527482 ~ 9527757 (+)
G116019 NA non-coding downstream 334585 9564726 ~ 9566691 (+)
G116020 NA non-coding downstream 338323 9568464 ~ 9569497 (+)
AMCG00018358 polr3k,rpc11 other upstream 21234 9199657 ~ 9206776 (+)
G115789 NA other upstream 533291 8693364 ~ 8694719 (+)
G115648 NA other upstream 1105839 8119778 ~ 8122171 (+)
G115590 fbxl16,LOC107685932,LOC107568165,LOC107738613,LOC107568127,LOC107690242 other upstream 1333561 7893627 ~ 7894449 (+)
AMCG00018280 NA other upstream 2480572 6710482 ~ 6747438 (+)
AMCG00018360 f100a other downstream 9670 9239811 ~ 9245234 (+)
AMCG00018368 NA other downstream 209516 9439657 ~ 9447144 (+)
AMCG00018369 NA other downstream 250811 9480952 ~ 9486146 (+)
AMCG00018374 NA other downstream 282173 9512314 ~ 9513236 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other downstream 331920 9562061 ~ 9564564 (+)

Expression


Co-expression Network